Factsheet for Bra003691.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68066	Canola	cytosol	99.65	99.65
CDX79187	Canola	cytosol	98.83	99.29
AT1G77030.1	Thale cress	nucleus	84.86	85.56
KRH64859	Soybean	nucleus	63.5	69.63
KRH09570	Soybean	nucleus	63.26	69.37
Solyc10g009070.2.1	Tomato	nucleus	62.79	68.15
GSMUA_Achr9P14580_001	Banana	nucleus	59.51	61.75
Zm00001d032317_P001	Maize	nucleus	33.92	59.1
Zm00001d050315_P001	Maize	nucleus	56.92	57.74
OQU80427	Sorghum	nucleus	56.81	56.74
TraesCS4B01G341100.1	Wheat	plastid	55.75	55.62
TraesCS4D01G337100.1	Wheat	nucleus	55.52	55.58
Os08t0416100-01	Rice	nucleus	55.4	55.46
TraesCS5A01G510500.1	Wheat	nucleus	55.4	55.4
HORVU4Hr1G083970.6	Barley	nucleus	45.89	44.79
Bra029342.1-P	Field mustard	cytosol	15.38	28.98
Bra026724.1-P	Field mustard	nucleus	16.43	28.81
Bra037574.1-P	Field mustard	nucleus	16.67	25.09
Bra022336.1-P	Field mustard	nucleus	16.67	25.0
Bra001713.1-P	Field mustard	nucleus	16.55	23.27
Bra024428.1-P	Field mustard	nucleus	16.08	23.18
Bra028757.1-P	Field mustard	nucleus	15.96	22.9
Bra009114.1-P	Field mustard	nucleus	15.96	22.86
Bra004584.1-P	Field mustard	nucleus	16.31	22.64
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	16.31	22.1
Bra028652.1-P	Field mustard	nucleus	13.97	22.0
Bra009356.1-P	Field mustard	cytosol	14.44	21.93
Bra002946.1-P	Field mustard	nucleus	17.96	20.56
Bra040743.1-P	Field mustard	nucleus	19.13	18.65
Bra038492.1-P	Field mustard	nucleus	18.78	17.62
Bra038650.1-P	Field mustard	mitochondrion	14.91	17.09
Bra009355.1-P	Field mustard	mitochondrion, plastid	14.32	16.01
Bra027808.1-P	Field mustard	mitochondrion	13.5	14.72

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra003691	EnsemblPlants:Bra003691.1	EnsemblPlants:Bra003691.1-P	ncoils:Coil
InterPro:DBP10_C	InterPro:DDX54/DBP10	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4CHK8	InterPro:P-loop_NTPase	PFAM:PD024971
PFAM:PF00270	PFAM:PF00271	PFAM:PF08147	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF292	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01123
SUPFAM:SSF52540	UniParc:UPI00025414E0	SEG:seg	:	:	:

Description

AT1G77030 (E=6e-286) | ATP binding / ATP-dependent helicase/ RNA binding / helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding

Coordinates

chrA07:+:14495224..14499172

Molecular Weight (calculated)

93863.6 Da

IEP (calculated)

10.556

GRAVY (calculated)

-0.608

Length

852 amino acids

Sequence
(BLAST)

001: MVEGKGFLVS SVTELHRKEK QKKKGKSGGF ESLNLGPNVY NAIKKKGYKV PTPIQRKTMP LILSGVDVVA MARTGSGKTA AFLIPMLEKL KQHVPQGGVR
101: ALILSPTRDL AEQTLKFAKE LGKFTDLRVT LLVGGDSMQD QFEELTKSPD VIIATPGRLM HLLEEVDDMS LRTVEYVVFD EADSLFGMGF AEQLHQILAK
201: LGENRQTLLF SATLPSALAE FAKAGLREPQ LVRLDVENKI SPDLKLSFLT LRPEEKYAAL IYLVREHISS NEQTIIFVST KHHVEFVNSL FKLENIVPSV
301: CYGDMDQDAR KIHVSRFRAR KTMLLIVTDI AARGIDIPLL DNVINWDFPP RPKIFVHRVG RAARAGRTGS AISFVTPEDI PYLLDLHLFL SKPIRPAPTE
401: DEVLKNMEEV MNRTSEAIES GVTVYGRFPQ KTIDLIFNKI QEMIDSSAEL DSLERTSRKA FRLYTTTKPA PSKESIRRAK ALPREGLHPM FKSIIEGGEL
501: EAMAFFQKIK NFRPKQTILE AEGENAKARN VKGLQWVDVM KRKREVHEEI INKRHEQSQK TSSNNHLEME DDEPITTSIE DKIAGSKVSG KKRTAQQTFK
601: DEEFYISSIP VNHHSEAGLS VRGNEGFGSN RLDAAVLDLV ADDGQGMKQQ KTNYHWDKKS KKFIKLNNGD RVTASGKIKT ESGAKVRANK AGAIYKKWKD
701: STHKKAFSRE DGDGDDTPSM SGRGGRRGKR WSASVPNAHV RSEIKDLEQV RKERQEKANK MSYLHSKRGG GRGGARGGRG GGRGSGRDFD GGSGRDFAGR
801: SSRGGRGGGS SRGGRGGGFG GGRGGGSGGG RGGSSRGGKR GGGGGGKRGR GR

Best Arabidopsis Sequence Match ( AT1G77030.1 )
(BLAST)

001: MVEGKGFLVS SVTELHRKEK QKKKGKSGGF ESLNLGPNVF NAIKKKGYKV PTPIQRKTMP LILSGVDVVA MARTGSGKTA AFLIPMLEKL KQHVPQGGVR
101: ALILSPTRDL AEQTLKFTKE LGKFTDLRVS LLVGGDSMED QFEELTKGPD VIIATPGRLM HLLSEVDDMT LRTVEYVVFD EADSLFGMGF AEQLHQILTQ
201: LSENRQTLLF SATLPSALAE FAKAGLREPQ LVRLDVENKI SPDLKLSFLT VRPEEKYSAL LYLVREHISS DQQTLIFVST KHHVEFVNSL FKLENIEPSV
301: CYGDMDQDAR KIHVSRFRAR KTMLLIVTDI AARGIDIPLL DNVINWDFPP RPKIFVHRVG RAARAGRTGC AYSFVTPEDM PYMLDLHLFL SKPVRPAPTE
401: DEVLKNMEEV MTKTSQAIDS GVTVYGRFPQ KTIDLIFNRT REMIDSSAEL DSLERTSTKA FRLYSKTKPS PSKESIRRAK DLPREGLHPI FRSIIETGEL
501: EAMSFFQKIK NFRPKQTILE AEGEVAKSKH VKGPAGQWVD VMKKKRAIHE EIINTRHQQN QKTSNNHLEM EAEPTTSFVD GTVEGSKVSG KKRKAQETFK
601: DDEFFISSIP VNHHSEAGLS LRGNEGFGSN RLDAAVLDLV ADDGQGIKQQ QSNYHWDKKG KKYIKLNNGD RVTASGKIKT ESGAKATAKK TGIYKRWQER
701: SHKKVSRDSG DADETTRMSG RGGRDGKRRQ GSVPNAHVRS EIKDLDQVRK ERQQKANKVS YLQSKRGGRG GRGGARGGRG GGARGGRGGS RDFGGGGRDF
801: GSSSDRGGRS GGRDFGGRRG GASTSSRGGK RGGGRGGGGK RGRGR

Arabidopsis Description

RH29Putative DEAD-box ATP-dependent RNA helicase 29 [Source:UniProtKB/Swiss-Prot;Acc:O49289]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.