Factsheet for Os08t0416100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032317_P001	Maize	nucleus	47.24	82.21
Zm00001d050315_P001	Maize	nucleus	78.85	79.88
OQU80427	Sorghum	nucleus	79.91	79.72
TraesCS5A01G510500.1	Wheat	nucleus	78.03	77.93
TraesCS4D01G337100.1	Wheat	nucleus	77.79	77.79
TraesCS4B01G341100.1	Wheat	plastid	77.79	77.52
GSMUA_Achr9P14580_001	Banana	nucleus	62.98	65.29
Solyc10g009070.2.1	Tomato	nucleus	59.69	64.71
KRH09570	Soybean	nucleus	58.28	63.84
KRH64859	Soybean	nucleus	58.28	63.84
HORVU4Hr1G083970.6	Barley	nucleus	64.28	62.66
Bra003691.1-P	Field mustard	cytosol	55.46	55.4
CDX79187	Canola	cytosol	55.11	55.31
CDX68066	Canola	cytosol	55.35	55.28
AT1G77030.1	Thale cress	nucleus	54.76	55.15
Os07t0660000-00	Rice	cytosol	14.57	27.87
Os03t0669000-01	Rice	cytosol, nucleus, plastid	15.04	27.12
Os07t0633500-00	Rice	nucleus	12.34	26.05
Os05t0110500-02	Rice	nucleus	17.39	25.04
Os03t0802700-01	Rice	nucleus	16.92	24.41
Os06t0535100-00	Rice	nucleus	16.57	24.23
Os01t0618500-01	Rice	nucleus	14.45	22.95
Os01t0164500-01	Rice	plastid	16.22	21.33
Os01t0618400-01	Rice	nucleus, plasma membrane	14.69	21.04
Os12t0481100-01	Rice	nucleus	18.8	19.95
Os07t0517000-01	Rice	nucleus	11.28	18.32
Os04t0510400-01	Rice	nucleus	16.57	16.95
Os02t0826100-01	Rice	cytosol	15.16	15.91
Os06t0526600-01	Rice	mitochondrion	14.45	13.33

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4345577	UniProt:A3BT52	EMBL:AK070406	ProteinID:BAC98579.1
ProteinID:BAF23722.1	ProteinID:BAT05437.1	InterPro:DBP10_C	InterPro:DDX54/DBP10	InterPro:DEAD/DEAH_box_helicase_dom	ProteinID:EEE68686.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlantsGene:Os08g0416100	EnsemblPlants:Os08t0416100-01	InterPro:P-loop_NTPase	PFAM:PD024971
PFAM:PF00270	PFAM:PF00271	PFAM:PF08147	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF292	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01123
SUPFAM:SSF52540	UniParc:UPI0000DD9519	RefSeq:XP_015650417.1	SEG:seg	:	:

Description

RNA helicase, RNA helicase 29DEAD-like helicase, N-terminal domain containing protein. (Os08t0416100-01)

Coordinates

chr8:-:19898592..19907743

Molecular Weight (calculated)

95537.9 Da

IEP (calculated)

10.485

GRAVY (calculated)

-0.644

Length

851 amino acids

Sequence
(BLAST)

001: MARLNPSKPS SRGGKPRSSS ADAMAEHKPL PGRPKREGEG ASKRKAKSGG FESMGLCEEV YRGVRHKGYR VPTPIQRKAM PLILAGHDIA AMARTGSGKT
101: AAFLVPMIQR LRRHDAGAGI RALILSPTRD LATQTLKFAQ QLGKFTDLKI SLIVGGDSME SQFEELAENP DIIIATPGRL VHHLAEVEDL NLRTVEYVVF
201: DEADSLFSLG LIQQLHDILH KLSDTRQTLL FSATLPQALA DFAKAGLRDP QIVRLDLDKK ISPDLKLAFF TLRQEEKLAA LLYLVRERIS SEEQTIIFVS
301: TKHHVEFLNI LFREEGLEPS LSYGAMDQEA RNIHISKFRA RKTMILIVTD VAARGLDIPL LDNVVNWDFP AKPKLFVHRV GRVARQGRSG TAYTFVTSED
401: MAYLLDLHLF LSKPLRPAPT EEELLKDMEG MNLKIDRALA NGETVYGRFP QTIIDLVSDG IKEVINGCTD LIALEKPCTN AFHLYLKTRP MPSTESIRRV
501: KDLPREGLHP IFRDVLGSDE LSALAFSERL KSFRPKQTIL EAEGEAARGS NQWLDVMKKK REVHEGIINL VHQKNNVDHE PKEELVENIS NWERKDVCGN
601: KRKLQSFRDE EYYISSVPQN QHLEAGLSVR ANEGFVENRL DAAVLDLVDD ETSGMQAQKT RYHWKKNKFV KLNSGDRVTA TGKIKTESGA KLKPTKTGIY
701: KKWQQKTHRS IDTGRKFGGF AEEGASTTGS HQRGNRKHTA VGRGRRYIPN ADVPSEIRNP EQIQKSRQQK AMDIARMKNR STKESKFQKF QKNNRRHDGP
801: LKDGKFQKNR RPDGNGKNRR PDGNGKGRGK GKGNANGFGK GKGKMKGKGT R

Best Arabidopsis Sequence Match ( AT1G77030.1 )
(BLAST)

001: MVEGKGFLVS SVTELHRKEK QKKKGKSGGF ESLNLGPNVF NAIKKKGYKV PTPIQRKTMP LILSGVDVVA MARTGSGKTA AFLIPMLEKL KQHVPQGGVR
101: ALILSPTRDL AEQTLKFTKE LGKFTDLRVS LLVGGDSMED QFEELTKGPD VIIATPGRLM HLLSEVDDMT LRTVEYVVFD EADSLFGMGF AEQLHQILTQ
201: LSENRQTLLF SATLPSALAE FAKAGLREPQ LVRLDVENKI SPDLKLSFLT VRPEEKYSAL LYLVREHISS DQQTLIFVST KHHVEFVNSL FKLENIEPSV
301: CYGDMDQDAR KIHVSRFRAR KTMLLIVTDI AARGIDIPLL DNVINWDFPP RPKIFVHRVG RAARAGRTGC AYSFVTPEDM PYMLDLHLFL SKPVRPAPTE
401: DEVLKNMEEV MTKTSQAIDS GVTVYGRFPQ KTIDLIFNRT REMIDSSAEL DSLERTSTKA FRLYSKTKPS PSKESIRRAK DLPREGLHPI FRSIIETGEL
501: EAMSFFQKIK NFRPKQTILE AEGEVAKSKH VKGPAGQWVD VMKKKRAIHE EIINTRHQQN QKTSNNHLEM EAEPTTSFVD GTVEGSKVSG KKRKAQETFK
601: DDEFFISSIP VNHHSEAGLS LRGNEGFGSN RLDAAVLDLV ADDGQGIKQQ QSNYHWDKKG KKYIKLNNGD RVTASGKIKT ESGAKATAKK TGIYKRWQER
701: SHKKVSRDSG DADETTRMSG RGGRDGKRRQ GSVPNAHVRS EIKDLDQVRK ERQQKANKVS YLQSKRGGRG GRGGARGGRG GGARGGRGGS RDFGGGGRDF
801: GSSSDRGGRS GGRDFGGRRG GASTSSRGGK RGGGRGGGGK RGRGR

Arabidopsis Description

RH29Putative DEAD-box ATP-dependent RNA helicase 29 [Source:UniProtKB/Swiss-Prot;Acc:O49289]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.