Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G341100.1 | Wheat | plastid | 99.06 | 98.83 |
| TraesCS4D01G337100.1 | Wheat | nucleus | 98.71 | 98.82 |
| Zm00001d032317_P001 | Maize | nucleus | 45.77 | 79.75 |
| Os08t0416100-01 | Rice | nucleus | 77.93 | 78.03 |
| Zm00001d050315_P001 | Maize | nucleus | 75.12 | 76.19 |
| HORVU4Hr1G083970.6 | Barley | nucleus | 77.93 | 76.06 |
| OQU80427 | Sorghum | nucleus | 75.59 | 75.5 |
| Solyc10g009070.2.1 | Tomato | nucleus | 59.39 | 64.46 |
| GSMUA_Achr9P14580_001 | Banana | nucleus | 60.8 | 63.09 |
| KRH64859 | Soybean | nucleus | 57.28 | 62.81 |
| KRH09570 | Soybean | nucleus | 57.04 | 62.55 |
| Bra003691.1-P | Field mustard | cytosol | 55.4 | 55.4 |
| CDX68066 | Canola | cytosol | 55.4 | 55.4 |
| AT1G77030.1 | Thale cress | nucleus | 54.81 | 55.27 |
| CDX79187 | Canola | cytosol | 54.81 | 55.07 |
| TraesCS2A01G128700.1 | Wheat | nucleus | 15.73 | 29.26 |
| TraesCS6A01G114900.1 | Wheat | nucleus | 15.61 | 29.1 |
| TraesCS2A01G154800.1 | Wheat | cytosol | 15.49 | 25.88 |
| TraesCS5A01G042300.1 | Wheat | nucleus | 16.9 | 25.0 |
| TraesCS6A01G312900.1 | Wheat | nucleus | 16.08 | 24.77 |
| TraesCS6A01G356000.1 | Wheat | nucleus | 16.31 | 24.26 |
| TraesCS1A01G030500.1 | Wheat | nucleus | 17.25 | 24.02 |
| TraesCS5A01G114200.1 | Wheat | nucleus | 16.08 | 23.62 |
| TraesCS3A01G222500.1 | Wheat | nucleus, plastid | 14.55 | 23.05 |
| TraesCS3A01G222700.1 | Wheat | mitochondrion | 14.55 | 21.09 |
| TraesCS5A01G375900.1 | Wheat | nucleus | 19.13 | 20.95 |
| TraesCS3A01G100100.1 | Wheat | plastid | 15.61 | 20.65 |
| TraesCS2A01G222000.1 | Wheat | mitochondrion, nucleus | 17.96 | 20.16 |
| TraesCS7A01G313300.1 | Wheat | nucleus | 7.28 | 20.06 |
| TraesCS2A01G366700.1 | Wheat | nucleus | 16.31 | 16.47 |
| TraesCS6A01G409100.1 | Wheat | cytosol | 14.08 | 13.54 |
| TraesCS7A01G350700.1 | Wheat | mitochondrion | 14.67 | 12.91 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DBP10_C | InterPro:DDX54/DBP10 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0016787 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase |
| PFAM:PD024971 | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF292 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SMART:SM01123 |
| SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS5A01G510500 | EnsemblPlants:TraesCS5A01G510500.1 | TIGR:cd00079 | TIGR:cd00268 | SEG:seg |
Description
No Description!
Coordinates
chr5A:+:674115187..674124257
Molecular Weight (calculated)
94671.5 Da
IEP (calculated)
10.575
GRAVY (calculated)
-0.654
Length
852 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPSGKSSPS ADAAASSTAD RKPWRRPQMK SKAAGKKKAA QAAHNKKPKS GGFESMGLCE EVYRGVRHKG YRVPTPIQRK AMPLILAGLD VAAMARTGSG
101: KTAAFLVPML QRLRHRDPGA GIRALILSPT RDLATQTLKF THQLGKFSDL KTGLIVGGGS MESQFEVLAD NPDIIIATPG RFEHILSMVD DLSLRSVEYV
201: VFDEADSLFS LGFAEQLHKI LHKLSDTRQT LLFSATMPKA LAEFAKAGLR DPQVIRLDLD KKISPDLKLA FFTLRQEEKL AALLYLVRER ISSEEQTMIF
301: VSTKYHVEFL NILFREEGLE ASLSYGAMDQ EARTIHISRF RARKTMLLIV TDVAARGLDI PLLDNVVNWD FPAKPKLFIH RVGRVARQGR TGTAFTFVTS
401: EDMPFLLDLH LFLSKPLRPA PTEEELLKDM DGMNLKINQS LADGETIYGR FPQTILDLCS DGVKEVISGC TDLIALEKPC ANAFRLYLKT RAMPSKESVR
501: RAKDLPREGL HPIFRDVLRP DEISAIAFSE RLKSFRPKQT ILEAEGEAAR SRSSKGSNQW LDVMKKKREV HEGIINSVHE QSGDLATKEE DTENISNWEK
601: KEVCGKKRKS QSFRDEDHYI SSVPQNQHSE AGLSVKGNEG FVQDRLDAAV LDLVDDETSG MQAQKTRYHW MKNKFVKLNN GDRVTSTGKI KTESSAKLKA
701: SKDIYKKWQQ KSHRAISSGG KDGAEGGSST PAGYQRGNRR YPAAGRGRSS IPNADVPSEI RNPQQMRKGR QEKAMQNLRR NERSAKDGKS PGKFQKNRRP
801: NGSGRDDKFQ DSRSQKSRRP DGKGKGGGKG NAKGFGKGKG KGKGNPKGRG TR
101: KTAAFLVPML QRLRHRDPGA GIRALILSPT RDLATQTLKF THQLGKFSDL KTGLIVGGGS MESQFEVLAD NPDIIIATPG RFEHILSMVD DLSLRSVEYV
201: VFDEADSLFS LGFAEQLHKI LHKLSDTRQT LLFSATMPKA LAEFAKAGLR DPQVIRLDLD KKISPDLKLA FFTLRQEEKL AALLYLVRER ISSEEQTMIF
301: VSTKYHVEFL NILFREEGLE ASLSYGAMDQ EARTIHISRF RARKTMLLIV TDVAARGLDI PLLDNVVNWD FPAKPKLFIH RVGRVARQGR TGTAFTFVTS
401: EDMPFLLDLH LFLSKPLRPA PTEEELLKDM DGMNLKINQS LADGETIYGR FPQTILDLCS DGVKEVISGC TDLIALEKPC ANAFRLYLKT RAMPSKESVR
501: RAKDLPREGL HPIFRDVLRP DEISAIAFSE RLKSFRPKQT ILEAEGEAAR SRSSKGSNQW LDVMKKKREV HEGIINSVHE QSGDLATKEE DTENISNWEK
601: KEVCGKKRKS QSFRDEDHYI SSVPQNQHSE AGLSVKGNEG FVQDRLDAAV LDLVDDETSG MQAQKTRYHW MKNKFVKLNN GDRVTSTGKI KTESSAKLKA
701: SKDIYKKWQQ KSHRAISSGG KDGAEGGSST PAGYQRGNRR YPAAGRGRSS IPNADVPSEI RNPQQMRKGR QEKAMQNLRR NERSAKDGKS PGKFQKNRRP
801: NGSGRDDKFQ DSRSQKSRRP DGKGKGGGKG NAKGFGKGKG KGKGNPKGRG TR
001: MVEGKGFLVS SVTELHRKEK QKKKGKSGGF ESLNLGPNVF NAIKKKGYKV PTPIQRKTMP LILSGVDVVA MARTGSGKTA AFLIPMLEKL KQHVPQGGVR
101: ALILSPTRDL AEQTLKFTKE LGKFTDLRVS LLVGGDSMED QFEELTKGPD VIIATPGRLM HLLSEVDDMT LRTVEYVVFD EADSLFGMGF AEQLHQILTQ
201: LSENRQTLLF SATLPSALAE FAKAGLREPQ LVRLDVENKI SPDLKLSFLT VRPEEKYSAL LYLVREHISS DQQTLIFVST KHHVEFVNSL FKLENIEPSV
301: CYGDMDQDAR KIHVSRFRAR KTMLLIVTDI AARGIDIPLL DNVINWDFPP RPKIFVHRVG RAARAGRTGC AYSFVTPEDM PYMLDLHLFL SKPVRPAPTE
401: DEVLKNMEEV MTKTSQAIDS GVTVYGRFPQ KTIDLIFNRT REMIDSSAEL DSLERTSTKA FRLYSKTKPS PSKESIRRAK DLPREGLHPI FRSIIETGEL
501: EAMSFFQKIK NFRPKQTILE AEGEVAKSKH VKGPAGQWVD VMKKKRAIHE EIINTRHQQN QKTSNNHLEM EAEPTTSFVD GTVEGSKVSG KKRKAQETFK
601: DDEFFISSIP VNHHSEAGLS LRGNEGFGSN RLDAAVLDLV ADDGQGIKQQ QSNYHWDKKG KKYIKLNNGD RVTASGKIKT ESGAKATAKK TGIYKRWQER
701: SHKKVSRDSG DADETTRMSG RGGRDGKRRQ GSVPNAHVRS EIKDLDQVRK ERQQKANKVS YLQSKRGGRG GRGGARGGRG GGARGGRGGS RDFGGGGRDF
801: GSSSDRGGRS GGRDFGGRRG GASTSSRGGK RGGGRGGGGK RGRGR
101: ALILSPTRDL AEQTLKFTKE LGKFTDLRVS LLVGGDSMED QFEELTKGPD VIIATPGRLM HLLSEVDDMT LRTVEYVVFD EADSLFGMGF AEQLHQILTQ
201: LSENRQTLLF SATLPSALAE FAKAGLREPQ LVRLDVENKI SPDLKLSFLT VRPEEKYSAL LYLVREHISS DQQTLIFVST KHHVEFVNSL FKLENIEPSV
301: CYGDMDQDAR KIHVSRFRAR KTMLLIVTDI AARGIDIPLL DNVINWDFPP RPKIFVHRVG RAARAGRTGC AYSFVTPEDM PYMLDLHLFL SKPVRPAPTE
401: DEVLKNMEEV MTKTSQAIDS GVTVYGRFPQ KTIDLIFNRT REMIDSSAEL DSLERTSTKA FRLYSKTKPS PSKESIRRAK DLPREGLHPI FRSIIETGEL
501: EAMSFFQKIK NFRPKQTILE AEGEVAKSKH VKGPAGQWVD VMKKKRAIHE EIINTRHQQN QKTSNNHLEM EAEPTTSFVD GTVEGSKVSG KKRKAQETFK
601: DDEFFISSIP VNHHSEAGLS LRGNEGFGSN RLDAAVLDLV ADDGQGIKQQ QSNYHWDKKG KKYIKLNNGD RVTASGKIKT ESGAKATAKK TGIYKRWQER
701: SHKKVSRDSG DADETTRMSG RGGRDGKRRQ GSVPNAHVRS EIKDLDQVRK ERQQKANKVS YLQSKRGGRG GRGGARGGRG GGARGGRGGS RDFGGGGRDF
801: GSSSDRGGRS GGRDFGGRRG GASTSSRGGK RGGGRGGGGK RGRGR
Arabidopsis Description
RH29Putative DEAD-box ATP-dependent RNA helicase 29 [Source:UniProtKB/Swiss-Prot;Acc:O49289]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.