Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G455000.1 | Wheat | cytosol | 93.91 | 98.7 |
| TraesCS6D01G392700.1 | Wheat | cytosol | 93.23 | 98.1 |
| HORVU6Hr1G093300.7 | Barley | cytosol, nucleus | 80.59 | 93.95 |
| Os02t0826100-01 | Rice | cytosol | 72.69 | 79.41 |
| EES07789 | Sorghum | mitochondrion | 73.59 | 79.22 |
| Zm00001d018516_P002 | Maize | mitochondrion | 72.23 | 78.24 |
| GSMUA_Achr3P14380_001 | Banana | cytosol | 36.91 | 73.15 |
| KRH41139 | Soybean | nucleus | 48.19 | 60.4 |
| VIT_02s0025g03950.t01 | Wine grape | mitochondrion | 51.35 | 60.34 |
| VIT_06s0004g07260.t01 | Wine grape | extracellular, vacuole | 10.5 | 58.12 |
| PGSC0003DMT400010896 | Potato | cytosol, nucleus, plastid | 48.65 | 53.47 |
| CDY45370 | Canola | mitochondrion | 47.07 | 53.32 |
| Bra027808.1-P | Field mustard | mitochondrion | 46.95 | 53.27 |
| Solyc12g056340.1.1 | Tomato | cytosol, nucleus, plastid | 48.19 | 53.04 |
| CDY49890 | Canola | mitochondrion | 46.61 | 52.95 |
| KRH59841 | Soybean | nucleus | 31.04 | 51.98 |
| AT1G63250.1 | Thale cress | mitochondrion | 46.5 | 51.63 |
| TraesCS3A01G222500.1 | Wheat | nucleus, plastid | 30.25 | 49.81 |
| AT2G07750.1 | Thale cress | plastid | 46.05 | 48.28 |
| TraesCS3A01G222700.1 | Wheat | mitochondrion | 30.59 | 46.09 |
| TraesCS7A01G350700.1 | Wheat | mitochondrion | 34.65 | 31.71 |
| TraesCS2A01G128700.1 | Wheat | nucleus | 13.77 | 26.64 |
| TraesCS6A01G114900.1 | Wheat | nucleus | 13.66 | 26.48 |
| TraesCS5A01G114200.1 | Wheat | nucleus | 17.04 | 26.03 |
| TraesCS6A01G356000.1 | Wheat | nucleus | 16.7 | 25.83 |
| TraesCS6A01G312900.1 | Wheat | nucleus | 15.8 | 25.32 |
| TraesCS5A01G042300.1 | Wheat | nucleus | 16.03 | 24.65 |
| TraesCS1A01G030500.1 | Wheat | nucleus | 16.59 | 24.02 |
| TraesCS2A01G154800.1 | Wheat | cytosol | 13.43 | 23.33 |
| TraesCS3A01G100100.1 | Wheat | plastid | 15.58 | 21.43 |
| KRH54980 | Soybean | nucleus | 3.72 | 18.54 |
| TraesCS5A01G375900.1 | Wheat | nucleus | 16.14 | 18.38 |
| TraesCS2A01G222000.1 | Wheat | mitochondrion, nucleus | 15.58 | 18.18 |
| TraesCS7A01G313300.1 | Wheat | nucleus | 6.32 | 18.12 |
| TraesCS2A01G366700.1 | Wheat | nucleus | 16.25 | 17.06 |
| TraesCS5A01G510500.1 | Wheat | nucleus | 13.54 | 14.08 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF324 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS6A01G409100 | EnsemblPlants:TraesCS6A01G409100.1 | TIGR:cd00079 | TIGR:cd00268 | : |
Description
No Description!
Coordinates
chr6A:-:613327487..613332031
Molecular Weight (calculated)
99603.8 Da
IEP (calculated)
9.616
GRAVY (calculated)
-0.475
Length
886 amino acids
Sequence
(BLAST)
(BLAST)
001: MIVELPGNVV VRIGALQSIS IFTQAFSESA AQPNTAAARQ EPEMGGGPRT FPGGLSKWQH KRMHEKLARG KERGLLRHEK QLYLARLRSE IRASHLPGAP
101: ASPADHAGPT SSRAHIRALA DRFLRPGAED LWNDDDGPLR RARLPLHQQQ QPARSLPSGA RMVDWKQVES GEKPKPPRGG GDWKDWEELD SGEPTAGRGA
201: GNEPRLPAAF NQRRGYGTAA PWWWQWSPGS GMPLQRKEAS FGFFGPKRCY SVMPPCSPCR ESGAALMPLV ARQLAEAGDG RKATPLALFY TQERLYSVAA
301: TRRFGQKWRP DSSDEDEEVM PAARGLRLAK FVASREDESE DDEPGETSAI RRKWSTAALR NCDMKRDRRP LKSYEEESDD DITGRIQELR EEIRNREVLG
401: AERRRYESRG ESVFTNKRFD ECGISPLTVE ALTDAGYIQT TVVQEAALPV CLEGKDVLVK AKTGTGKSVA FLLPAIESVL NAMKSHTNHR VSPIFALILC
501: PTRELAVQVT AEANVLVKYH HGVGVQSLIG GTRFKLDQRR LESDPCQILV ATPGRLMDHI ENRSSFSVRL MGLKLLVLDE ADHLLDLGFR KDIEKIADSL
601: PRQRQTLLFS ATVPKEVRRV SQMVLNKDHV FVDTVGLGAV ETPTKVQQQY LVVPHELHFH MVHRLLREHI DQEVDYKVIV FCTTAMVTEF MYIMLRDLKL
701: NVREIHSRKP QLYRTRISEE FRDSNRLILV TSDVSTRGVN YPDVTLVIQA GVPPGREHYI HRLGRTGREG KSGKGILLIA PWEEYFLKEI HDLPIQKAPV
801: PQIDQEMKQK VDDSIKIVDM SIKEAAYHAW LGYYNSIADI SRDKVMLADL ASRFGVSIGM EKPPTLFRKT ALKMGLKGVP GIRIRK
101: ASPADHAGPT SSRAHIRALA DRFLRPGAED LWNDDDGPLR RARLPLHQQQ QPARSLPSGA RMVDWKQVES GEKPKPPRGG GDWKDWEELD SGEPTAGRGA
201: GNEPRLPAAF NQRRGYGTAA PWWWQWSPGS GMPLQRKEAS FGFFGPKRCY SVMPPCSPCR ESGAALMPLV ARQLAEAGDG RKATPLALFY TQERLYSVAA
301: TRRFGQKWRP DSSDEDEEVM PAARGLRLAK FVASREDESE DDEPGETSAI RRKWSTAALR NCDMKRDRRP LKSYEEESDD DITGRIQELR EEIRNREVLG
401: AERRRYESRG ESVFTNKRFD ECGISPLTVE ALTDAGYIQT TVVQEAALPV CLEGKDVLVK AKTGTGKSVA FLLPAIESVL NAMKSHTNHR VSPIFALILC
501: PTRELAVQVT AEANVLVKYH HGVGVQSLIG GTRFKLDQRR LESDPCQILV ATPGRLMDHI ENRSSFSVRL MGLKLLVLDE ADHLLDLGFR KDIEKIADSL
601: PRQRQTLLFS ATVPKEVRRV SQMVLNKDHV FVDTVGLGAV ETPTKVQQQY LVVPHELHFH MVHRLLREHI DQEVDYKVIV FCTTAMVTEF MYIMLRDLKL
701: NVREIHSRKP QLYRTRISEE FRDSNRLILV TSDVSTRGVN YPDVTLVIQA GVPPGREHYI HRLGRTGREG KSGKGILLIA PWEEYFLKEI HDLPIQKAPV
801: PQIDQEMKQK VDDSIKIVDM SIKEAAYHAW LGYYNSIADI SRDKVMLADL ASRFGVSIGM EKPPTLFRKT ALKMGLKGVP GIRIRK
001: MYSLILRERS GSITGSLWNR ISSRNMGGGP RTFPGGLNKW QWKRMHEKKA REKENKLLDQ EKQLYEARIR TEIRAKMWGN PDSGEKTAKS KQSHGPMSPK
101: EHIKTLADRF MKAGAEDFWN ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF KRNESSCDEG DDFDAKKLDT
201: LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV
301: REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV
401: NKVAPIFALI LCPTRELASQ IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS RLMALKLFIV DEADLLLDLG
501: FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT
601: SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD
701: ELKDLPLEPI PAPDLDSIVK HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR RTAVKMGLKG ISGIPIRK
101: EHIKTLADRF MKAGAEDFWN ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF KRNESSCDEG DDFDAKKLDT
201: LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV
301: REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV
401: NKVAPIFALI LCPTRELASQ IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS RLMALKLFIV DEADLLLDLG
501: FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT
601: SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD
701: ELKDLPLEPI PAPDLDSIVK HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR RTAVKMGLKG ISGIPIRK
Arabidopsis Description
RH48Probable DEAD-box ATP-dependent RNA helicase 48 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8S9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.