Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
mitochondrion:
27297264
mitochondrion: 29575040 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
29575040
doi
Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES07789 | Sorghum | mitochondrion | 93.15 | 92.59 |
| Os02t0826100-01 | Rice | cytosol | 77.51 | 78.18 |
| TraesCS6B01G455000.1 | Wheat | cytosol | 78.73 | 76.39 |
| TraesCS6D01G392700.1 | Wheat | cytosol | 78.24 | 76.01 |
| GSMUA_Achr3P14380_001 | Banana | cytosol | 40.71 | 74.5 |
| HORVU6Hr1G093300.7 | Barley | cytosol, nucleus | 68.83 | 74.08 |
| TraesCS6A01G409100.1 | Wheat | cytosol | 78.24 | 72.23 |
| KRH41139 | Soybean | nucleus | 52.69 | 60.96 |
| VIT_02s0025g03950.t01 | Wine grape | mitochondrion | 55.5 | 60.21 |
| VIT_06s0004g07260.t01 | Wine grape | extracellular, vacuole | 11.25 | 57.5 |
| PGSC0003DMT400010896 | Potato | cytosol, nucleus, plastid | 54.4 | 55.21 |
| Solyc12g056340.1.1 | Tomato | cytosol, nucleus, plastid | 54.28 | 55.16 |
| CDY45370 | Canola | mitochondrion | 51.83 | 54.22 |
| Bra027808.1-P | Field mustard | mitochondrion | 51.71 | 54.16 |
| CDY49890 | Canola | mitochondrion | 51.47 | 53.97 |
| KRH59841 | Soybean | nucleus | 34.11 | 52.74 |
| AT1G63250.1 | Thale cress | mitochondrion | 51.34 | 52.63 |
| AT2G07750.1 | Thale cress | plastid | 50.73 | 49.11 |
| Zm00001d044203_P001 | Maize | plasma membrane | 33.13 | 48.39 |
| Zm00001d044208_P001 | Maize | plastid | 34.47 | 48.12 |
| Zm00001d046097_P001 | Maize | mitochondrion | 37.65 | 32.91 |
| Zm00001d027279_P001 | Maize | nucleus | 10.88 | 31.23 |
| Zm00001d000431_P001 | Maize | plastid | 17.11 | 28.81 |
| Zm00001d024719_P001 | Maize | nucleus | 11.61 | 28.11 |
| Zm00001d014787_P001 | Maize | nucleus | 15.77 | 27.74 |
| Zm00001d023501_P001 | Maize | nucleus | 18.7 | 25.37 |
| Zm00001d010225_P001 | Maize | plasma membrane | 15.16 | 24.12 |
| Zm00001d022246_P001 | Maize | cytosol | 15.28 | 24.04 |
| Zm00001d013056_P001 | Maize | nucleus | 19.19 | 23.93 |
| Zm00001d041799_P001 | Maize | cytosol | 7.7 | 23.86 |
| Zm00001d048477_P001 | Maize | plastid | 5.01 | 21.93 |
| Zm00001d021127_P001 | Maize | nucleus, plasma membrane | 18.58 | 19.74 |
| Zm00001d002007_P002 | Maize | cytosol, mitochondrion, plastid | 8.68 | 19.61 |
| Zm00001d039746_P001 | Maize | nucleus | 17.36 | 19.59 |
| Zm00001d006113_P001 | Maize | nucleus | 18.46 | 19.14 |
| Zm00001d006497_P002 | Maize | nucleus | 16.63 | 18.18 |
| Zm00001d003031_P002 | Maize | nucleus | 16.75 | 16.19 |
| KRH54980 | Soybean | nucleus | 3.3 | 15.17 |
| Zm00001d050315_P001 | Maize | nucleus | 15.53 | 15.12 |
| Zm00001d032317_P001 | Maize | nucleus | 7.7 | 12.88 |
Protein Annotations
| EntrezGene:103627905 | Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A1D6HPY1 | ProteinID:AQK76332.1 | ncoils:Coil |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF324 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0002214627 | EnsemblPlantsGene:Zm00001d018516 | EnsemblPlants:Zm00001d018516_P002 | EnsemblPlants:Zm00001d018516_T002 |
| SEG:seg | : | : | : | : | : |
Description
Probable DEAD-box ATP-dependent RNA helicase 48
Coordinates
chr5:-:222352428..222357010
Molecular Weight (calculated)
92274.1 Da
IEP (calculated)
10.047
GRAVY (calculated)
-0.520
Length
818 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGPRTFPG GLSKWQYKRM HEKLARQKQR GLLRHEKQLY LARLRSEIRA SRLPGAAAEA PPGGEGPTSS RAHIRALADR FRRPGAEDLW NEDDGPLRRV
101: KRPPTGIASG VRHQQQQLDS GKPRGGPSWE DLTSLDQPRP LDRGKGPTSA AFNPRREYLT VVAPWCPRWD PRPLGFVAPK KSYPVMTRCS VSCQPCVDLR
201: PLVASGLTED GNGRKDTPLA QFNQERFYSV AARRFGRKWR PDSSDQDDKG TSAPKKNLRF GKKFGASSEE DSEIDESGDT GAIRRRWSSA ALRNCDVKKE
301: RRVLKSYEEE SNDLAGRIQE LREEIRNREV LGTERRRYES RGESLLTSKR FDQCGVSALT VKALTDAGYV QTTVVQEAAL PICLEGKDVL VKAKTGTGKS
401: AAFLLPAIES VLNAMKSNTN QRVSPIFALV LCPTRELAIQ LTAEANVLLK YHEGIGVQSL IGGTRFKLDQ RRLESDPCQI LVATPGRLLD HIENKSSFSV
501: RLMRLKLLVL DEADHLLDLG FRKDIEKIVD TLPRQRQTLL FSATIPKEVR RVSQLVLKRD HVFVDTVGLG AVETPTKVQQ SCLVVPHELH FHTVHHLLRE
601: HIDREVDYKV IVFCTTAMVT EFMYIMLRDL KLNVREIHSR KPQLYRTRIS EEFRGSNRIV LVTSDVSTRG VNYPDVTLVI QVGVPPDREH YIHRLGRTAR
701: EGKSGKGILL LAPWEQYFLD EIGDLPIDKY PAPDIDQEMK QKVDDSIEMV DMSIKEAAYH AWLGYYNSIA DIGRDKRMVV DLANRFGASI GLEKPPAIYR
801: KTALKMGLKD VPGIRIRK
101: KRPPTGIASG VRHQQQQLDS GKPRGGPSWE DLTSLDQPRP LDRGKGPTSA AFNPRREYLT VVAPWCPRWD PRPLGFVAPK KSYPVMTRCS VSCQPCVDLR
201: PLVASGLTED GNGRKDTPLA QFNQERFYSV AARRFGRKWR PDSSDQDDKG TSAPKKNLRF GKKFGASSEE DSEIDESGDT GAIRRRWSSA ALRNCDVKKE
301: RRVLKSYEEE SNDLAGRIQE LREEIRNREV LGTERRRYES RGESLLTSKR FDQCGVSALT VKALTDAGYV QTTVVQEAAL PICLEGKDVL VKAKTGTGKS
401: AAFLLPAIES VLNAMKSNTN QRVSPIFALV LCPTRELAIQ LTAEANVLLK YHEGIGVQSL IGGTRFKLDQ RRLESDPCQI LVATPGRLLD HIENKSSFSV
501: RLMRLKLLVL DEADHLLDLG FRKDIEKIVD TLPRQRQTLL FSATIPKEVR RVSQLVLKRD HVFVDTVGLG AVETPTKVQQ SCLVVPHELH FHTVHHLLRE
601: HIDREVDYKV IVFCTTAMVT EFMYIMLRDL KLNVREIHSR KPQLYRTRIS EEFRGSNRIV LVTSDVSTRG VNYPDVTLVI QVGVPPDREH YIHRLGRTAR
701: EGKSGKGILL LAPWEQYFLD EIGDLPIDKY PAPDIDQEMK QKVDDSIEMV DMSIKEAAYH AWLGYYNSIA DIGRDKRMVV DLANRFGASI GLEKPPAIYR
801: KTALKMGLKD VPGIRIRK
001: MYSLILRERS GSITGSLWNR ISSRNMGGGP RTFPGGLNKW QWKRMHEKKA REKENKLLDQ EKQLYEARIR TEIRAKMWGN PDSGEKTAKS KQSHGPMSPK
101: EHIKTLADRF MKAGAEDFWN ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF KRNESSCDEG DDFDAKKLDT
201: LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV
301: REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV
401: NKVAPIFALI LCPTRELASQ IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS RLMALKLFIV DEADLLLDLG
501: FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT
601: SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD
701: ELKDLPLEPI PAPDLDSIVK HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR RTAVKMGLKG ISGIPIRK
101: EHIKTLADRF MKAGAEDFWN ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF KRNESSCDEG DDFDAKKLDT
201: LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV
301: REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV
401: NKVAPIFALI LCPTRELASQ IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS RLMALKLFIV DEADLLLDLG
501: FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT
601: SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD
701: ELKDLPLEPI PAPDLDSIVK HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR RTAVKMGLKG ISGIPIRK
Arabidopsis Description
RH48Probable DEAD-box ATP-dependent RNA helicase 48 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8S9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.