Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES03287 | Sorghum | cytosol | 91.61 | 91.44 |
| HORVU3Hr1G054730.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 74.82 | 77.88 |
| TraesCS3B01G252700.2 | Wheat | nucleus | 65.54 | 76.94 |
| Os01t0618500-01 | Rice | nucleus | 73.57 | 76.87 |
| TraesCS3D01G230300.1 | Wheat | nucleus | 73.39 | 76.39 |
| TraesCS3A01G222500.1 | Wheat | nucleus, plastid | 73.39 | 76.39 |
| Zm00001d044208_P001 | Maize | plastid | 75.89 | 72.53 |
| Bra028652.1-P | Field mustard | nucleus | 55.54 | 57.49 |
| CDY40740 | Canola | cytosol | 55.18 | 57.12 |
| Bra009356.1-P | Field mustard | cytosol | 56.96 | 56.86 |
| AT5G08620.1 | Thale cress | nucleus | 56.43 | 56.13 |
| CDY44780 | Canola | mitochondrion | 55.71 | 53.98 |
| KRH47920 | Soybean | nucleus | 63.93 | 50.92 |
| GSMUA_Achr8P04210_001 | Banana | cytosol | 65.18 | 49.32 |
| AT5G63630.2 | Thale cress | mitochondrion, plastid | 61.07 | 47.77 |
| CDY41525 | Canola | mitochondrion | 60.54 | 47.68 |
| CDX84428 | Canola | mitochondrion | 60.18 | 47.67 |
| VIT_15s0046g01010.t01 | Wine grape | plastid | 64.46 | 46.94 |
| Bra038650.1-P | Field mustard | mitochondrion | 60.54 | 45.63 |
| Bra009355.1-P | Field mustard | mitochondrion, plastid | 61.07 | 44.88 |
| KRH06491 | Soybean | nucleus | 63.75 | 44.29 |
| AT5G08610.1 | Thale cress | mitochondrion, plastid | 61.25 | 40.35 |
| Solyc01g095740.2.1 | Tomato | nucleus | 61.79 | 39.77 |
| PGSC0003DMT400000611 | Potato | mitochondrion | 61.07 | 39.27 |
| Zm00001d046097_P001 | Maize | mitochondrion | 59.46 | 35.58 |
| Zm00001d018516_P002 | Maize | mitochondrion | 48.39 | 33.13 |
| Zm00001d027279_P001 | Maize | nucleus | 14.82 | 29.12 |
| Zm00001d024719_P001 | Maize | nucleus | 17.5 | 28.99 |
| Zm00001d000431_P001 | Maize | plastid | 24.29 | 27.98 |
| Zm00001d014787_P001 | Maize | nucleus | 23.21 | 27.96 |
| Zm00001d023501_P001 | Maize | nucleus | 28.93 | 26.87 |
| CDY21554 | Canola | mitochondrion | 60.54 | 24.94 |
| CDX69935 | Canola | mitochondrion | 60.71 | 24.66 |
| Zm00001d041799_P001 | Maize | cytosol | 11.43 | 24.24 |
| Zm00001d013056_P001 | Maize | nucleus | 28.04 | 23.93 |
| Zm00001d022246_P001 | Maize | cytosol | 22.14 | 23.85 |
| Zm00001d010225_P001 | Maize | plasma membrane | 21.07 | 22.96 |
| Zm00001d048477_P001 | Maize | plastid | 7.14 | 21.39 |
| Zm00001d002007_P002 | Maize | cytosol, mitochondrion, plastid | 12.86 | 19.89 |
| Zm00001d039746_P001 | Maize | nucleus | 25.36 | 19.59 |
| Zm00001d021127_P001 | Maize | nucleus, plasma membrane | 25.18 | 18.31 |
| Zm00001d006497_P002 | Maize | nucleus | 24.11 | 18.05 |
| Zm00001d006113_P001 | Maize | nucleus | 25.0 | 17.74 |
| Zm00001d003031_P002 | Maize | nucleus | 24.29 | 16.08 |
| Zm00001d050315_P001 | Maize | nucleus | 21.61 | 14.4 |
| Zm00001d032317_P001 | Maize | nucleus | 10.18 | 11.66 |
Protein Annotations
| EntrezGene:100279341 | Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:B7ZXN0 | EMBL:BT054072 | InterPro:DEAD/DEAH_box_helicase_dom |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | ProteinID:ONM40439.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF275 | InterPro:RNA-helicase_DEAD-box_CS |
| InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI000191708F | EnsemblPlantsGene:Zm00001d044203 |
| EnsemblPlants:Zm00001d044203_P001 | EnsemblPlants:Zm00001d044203_T001 | SEG:seg | : | : | : |
Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Coordinates
chr3:-:221806115..221811187
Molecular Weight (calculated)
61477.5 Da
IEP (calculated)
10.090
GRAVY (calculated)
-0.255
Length
560 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTSANPKLK RRRGGLRKQG PGYPTVATTG AMFAHEVGAE GPRRDTRQGP ALPRVVATST RGGGAIEQGA DGMEGSASKT DRSVHEAVGV DGTYLTETRF
101: DQCAISPLSL KAIKDAGYER MTRVQEATLP IILQGKDVLA KAKTGTGKTV AFLLPAIEVL SALPRSTSIN LLVMCPTREL ANQLAAEARK LLKYHRSLGV
201: QVVIGGTRLP QEQRSMQANP CQILVATPGR LKDHLENTPG FSTRIRGVKV LVLDEADRLL DMGFRRDIEK IITFIPKDRQ TLLFSATVSE EIHQISHLAM
301: RKDYDFINAV QEGDEETHAQ VNQTYMVAPL GLHLPILYDV LKKHVAEDAE YKVIVFCTTA MVTRLVAEVL SQLKLNIREI HSRKTQSART KVSDEFRKSK
401: GLILVSSDVS ARGVDYPDVT LVMQVGLPAD REQYIHRLGR TGRKGKEGQG ILLLAPWEMH FLSTVNDLSI SEAATPSVDS SIQAAVKDAV RRVEMKSKES
501: AYQAWLGYYN SHKATNRDKA RLVMLAEEFS QSIGLAVPPA IPKQILRKMG LSNVPGLRSS
101: DQCAISPLSL KAIKDAGYER MTRVQEATLP IILQGKDVLA KAKTGTGKTV AFLLPAIEVL SALPRSTSIN LLVMCPTREL ANQLAAEARK LLKYHRSLGV
201: QVVIGGTRLP QEQRSMQANP CQILVATPGR LKDHLENTPG FSTRIRGVKV LVLDEADRLL DMGFRRDIEK IITFIPKDRQ TLLFSATVSE EIHQISHLAM
301: RKDYDFINAV QEGDEETHAQ VNQTYMVAPL GLHLPILYDV LKKHVAEDAE YKVIVFCTTA MVTRLVAEVL SQLKLNIREI HSRKTQSART KVSDEFRKSK
401: GLILVSSDVS ARGVDYPDVT LVMQVGLPAD REQYIHRLGR TGRKGKEGQG ILLLAPWEMH FLSTVNDLSI SEAATPSVDS SIQAAVKDAV RRVEMKSKES
501: AYQAWLGYYN SHKATNRDKA RLVMLAEEFS QSIGLAVPPA IPKQILRKMG LSNVPGLRSS
001: MSSKFPLGVR FITHSLPCTR LASMNSGALI YSFRSVPVLS KAFPFRLKYI GLGSRVNFST RPERSQPEFA RRSGAGGEIR ASKSLIEDEA ELSDWVSDLR
101: TSSLRGKFTS DEDNADPEVV RRNVDRDTSR GPRRGREGQS DRFGGAKRGK EGEMDRFGSP NRRRTSGEPA DSFGNKRLGD REGSRNGRVQ GKSSESSFRG
201: RSDRNVDSGS SFRGRSDKNV DSGSSFRGRN DRNVDSGSSF RGRSDRNVDS GSSFRGRSDR NVDSGSSFRG RNDRNVDSGS SFRGRNDRNV ESGFRREPGS
301: ENNRGLGKQT RGLSLEEEDS SDDDENRVGL GNIDDLPSED SSDEDDENDE PLIKKAASAK AVQTDKPTGE HVKTSDSYLS KTRFDQFPLS PLSLKAIKDA
401: GFETMTVVQE ATLPIILQGK DVLAKAKTGT GKTVAFLLPA IEAVIKSPPA SRDSRQPPII VLVVCPTREL ASQAAAEANT LLKYHPSIGV QVVIGGTKLP
501: TEQRRMQTNP CQILVATPGR LKDHIENTSG FATRLMGVKV LVLDEADHLL DMGFRRDIER IIAAVPKQRQ TFLFSATVPE EVRQICHVAL KRDHEFINCV
601: QEGSGETHQK VTQMYMIASL DRHFSLLHVL LKEHIADNVD YKVIIFCTTA MVTRLVADLL SQLSLNVREI HSRKPQSYRT RVSDEFRKSK AIILVTSDVS
701: ARGVDYPDVS LVVQMGLPSD REQYIHRLGR TGRKGKEGEG VLLLAPWEEY FMSSVKDLPI TKSPLPPIDP EAVKRVQKGL SQVEMKNKEA AYQAWLGYYK
801: SQKMIARDTT RLVELANEFS RSMGLDSPPA IPKNVLGKMG LKNVPGLRTK
101: TSSLRGKFTS DEDNADPEVV RRNVDRDTSR GPRRGREGQS DRFGGAKRGK EGEMDRFGSP NRRRTSGEPA DSFGNKRLGD REGSRNGRVQ GKSSESSFRG
201: RSDRNVDSGS SFRGRSDKNV DSGSSFRGRN DRNVDSGSSF RGRSDRNVDS GSSFRGRSDR NVDSGSSFRG RNDRNVDSGS SFRGRNDRNV ESGFRREPGS
301: ENNRGLGKQT RGLSLEEEDS SDDDENRVGL GNIDDLPSED SSDEDDENDE PLIKKAASAK AVQTDKPTGE HVKTSDSYLS KTRFDQFPLS PLSLKAIKDA
401: GFETMTVVQE ATLPIILQGK DVLAKAKTGT GKTVAFLLPA IEAVIKSPPA SRDSRQPPII VLVVCPTREL ASQAAAEANT LLKYHPSIGV QVVIGGTKLP
501: TEQRRMQTNP CQILVATPGR LKDHIENTSG FATRLMGVKV LVLDEADHLL DMGFRRDIER IIAAVPKQRQ TFLFSATVPE EVRQICHVAL KRDHEFINCV
601: QEGSGETHQK VTQMYMIASL DRHFSLLHVL LKEHIADNVD YKVIIFCTTA MVTRLVADLL SQLSLNVREI HSRKPQSYRT RVSDEFRKSK AIILVTSDVS
701: ARGVDYPDVS LVVQMGLPSD REQYIHRLGR TGRKGKEGEG VLLLAPWEEY FMSSVKDLPI TKSPLPPIDP EAVKRVQKGL SQVEMKNKEA AYQAWLGYYK
801: SQKMIARDTT RLVELANEFS RSMGLDSPPA IPKNVLGKMG LKNVPGLRTK
Arabidopsis Description
RH26PDE340 [Source:UniProtKB/TrEMBL;Acc:A0A178UFQ6]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.