Factsheet for TraesCS3B01G252700.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G230300.1	Wheat	nucleus	98.11	86.99
TraesCS3A01G222500.1	Wheat	nucleus, plastid	97.69	86.62
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	95.18	84.39
Os01t0618500-01	Rice	nucleus	79.66	70.9
EES03287	Sorghum	cytosol	80.71	68.63
Zm00001d044203_P001	Maize	plasma membrane	76.94	65.54
TraesCS3B01G252600.1	Wheat	plastid	76.31	62.22
Bra028652.1-P	Field mustard	nucleus	58.07	51.2
CDY40740	Canola	cytosol	57.86	51.02
Bra009356.1-P	Field mustard	cytosol	59.75	50.8
AT5G08620.1	Thale cress	nucleus	58.49	49.56
CDY44780	Canola	mitochondrion	58.28	48.1
GSMUA_Achr8P04210_001	Banana	cytosol	67.3	43.38
KRH47920	Soybean	nucleus	63.73	43.24
AT5G63630.2	Thale cress	mitochondrion, plastid	61.22	40.78
CDY41525	Canola	mitochondrion	60.59	40.65
CDX84428	Canola	mitochondrion	60.17	40.59
VIT_15s0046g01010.t01	Wine grape	plastid	64.15	39.79
Bra009355.1-P	Field mustard	mitochondrion, plastid	62.26	38.98
Bra038650.1-P	Field mustard	mitochondrion	60.59	38.9
KRH06491	Soybean	nucleus	63.73	37.72
AT5G08610.1	Thale cress	mitochondrion, plastid	62.47	35.06
Solyc01g095740.2.1	Tomato	nucleus	62.05	34.02
PGSC0003DMT400000611	Potato	mitochondrion	61.64	33.75
TraesCS7B01G232200.1	Wheat	mitochondrion	61.01	30.03
TraesCS6B01G455000.1	Wheat	cytosol	50.73	28.71
TraesCS6B01G342900.1	Wheat	nucleus	27.25	23.81
TraesCS5B01G120400.1	Wheat	nucleus	28.93	23.79
TraesCS6B01G142500.1	Wheat	mitochondrion, nucleus	22.85	22.71
CDY21554	Canola	mitochondrion	61.84	21.71
TraesCS2B01G150800.1	Wheat	mitochondrion	23.27	21.51
CDX69935	Canola	mitochondrion	61.84	21.39
TraesCS2B01G179900.1	Wheat	cytosol	22.64	21.14
TraesCS1B01G037600.1	Wheat	nucleus	25.58	19.81
TraesCS3B01G116900.1	Wheat	plastid	25.58	18.97
TraesCS7B01G213800.1	Wheat	nucleus	10.48	16.18
TraesCS2B01G247500.1	Wheat	nucleus	25.58	15.99
TraesCS5B01G378100.1	Wheat	nucleus	26.0	15.92
TraesCS2B01G384300.1	Wheat	nucleus	24.32	13.89
TraesCS4B01G341100.1	Wheat	plastid	22.85	12.76

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF275	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS3B01G252700	EnsemblPlants:TraesCS3B01G252700.2	TIGR:cd00079
TIGR:cd00268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:405817527..405826260

Molecular Weight (calculated)

52736.1 Da

IEP (calculated)

10.107

GRAVY (calculated)

-0.175

Length

477 amino acids

Sequence
(BLAST)

001: MSGNPGYAAV PKRQRRRRPR DAEDGSAFPR VVTSRPRGGD QVREVAVVPA EAMDIDAGTS TNAATGGVDG SYLSDTRFDQ CAVSPLSLQG IKDAGYERLT
101: RVQEATLPVI LEGKDVLAKA KTGTGKTVAF LLPAIELLST LPRSTSINLL VMLPTRELAY QVAVEARKLL KYHSSLGVQV VIGGTKLSQE QRSMRSTPCQ
201: ILVATPGRLI DHLENTPGFS ARIKGVKVLV LDEADRLLDM GFRRDIEKII AFIPKERQTL LFSATVPAEV REVSHLAMQK DYKFINTVQE GDEETHAQVN
301: QMYMVAPLDL HFSILYGVLK KHIAEDAEYK VIIFCTTAMV TKLVAEILSQ LKLNIREIHS RKSQSARTKV SDEFRKSKGL ILVSSDVSAR GVDYRDVSLV
401: IQVKGAIRRV EIKTKESAYQ AWLGYYNSNK TISRDKSRLV KLAEDFSQSM GLEIVPAIPK LILRKMGLQN VPGLRSS

Best Arabidopsis Sequence Match ( AT1G63250.1 )
(BLAST)

001: MYSLILRERS GSITGSLWNR ISSRNMGGGP RTFPGGLNKW QWKRMHEKKA REKENKLLDQ EKQLYEARIR TEIRAKMWGN PDSGEKTAKS KQSHGPMSPK
101: EHIKTLADRF MKAGAEDFWN ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF KRNESSCDEG DDFDAKKLDT
201: LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV
301: REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV
401: NKVAPIFALI LCPTRELASQ IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS RLMALKLFIV DEADLLLDLG
501: FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT
601: SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD
701: ELKDLPLEPI PAPDLDSIVK HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR RTAVKMGLKG ISGIPIRK

Arabidopsis Description

RH48Probable DEAD-box ATP-dependent RNA helicase 48 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8S9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.