Factsheet for TraesCS3D01G230300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G222500.1	Wheat	nucleus, plastid	98.14	98.14
TraesCS3B01G252700.2	Wheat	nucleus	86.99	98.11
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	94.98	94.98
Os01t0618500-01	Rice	nucleus	78.07	78.36
EES03287	Sorghum	cytosol	79.74	76.47
Zm00001d044203_P001	Maize	plasma membrane	76.39	73.39
TraesCS3D01G230400.2	Wheat	mitochondrion	75.84	69.39
Bra028652.1-P	Field mustard	nucleus	58.74	58.41
CDY40740	Canola	cytosol	58.36	58.04
Bra009356.1-P	Field mustard	cytosol	60.04	57.58
AT5G08620.1	Thale cress	nucleus	59.29	56.66
CDY44780	Canola	mitochondrion	58.92	54.84
GSMUA_Achr8P04210_001	Banana	cytosol	66.91	48.65
KRH47920	Soybean	nucleus	63.38	48.51
CDX84428	Canola	mitochondrion	60.41	45.97
AT5G63630.2	Thale cress	mitochondrion, plastid	61.15	45.95
CDY41525	Canola	mitochondrion	60.59	45.85
VIT_15s0046g01010.t01	Wine grape	plastid	64.13	44.86
Bra038650.1-P	Field mustard	mitochondrion	60.59	43.88
Bra009355.1-P	Field mustard	mitochondrion, plastid	62.08	43.83
KRH06491	Soybean	nucleus	63.38	42.31
AT5G08610.1	Thale cress	mitochondrion, plastid	62.45	39.53
Solyc01g095740.2.1	Tomato	nucleus	61.34	37.93
PGSC0003DMT400000611	Potato	mitochondrion	60.97	37.66
TraesCS7D01G328100.1	Wheat	mitochondrion	60.41	33.89
TraesCS6D01G392700.1	Wheat	cytosol	49.81	31.83
TraesCS6D01G292400.1	Wheat	nucleus	28.81	28.03
TraesCS2D01G131200.1	Wheat	nucleus	23.23	27.29
TraesCS5D01G127000.1	Wheat	nucleus	29.0	26.9
TraesCS5D01G050600.1	Wheat	nucleus	27.32	26.3
TraesCS6D01G103400.1	Wheat	nucleus	21.19	25.68
CDY21554	Canola	mitochondrion	61.52	24.36
CDX69935	Canola	mitochondrion	61.71	24.08
TraesCS2D01G160100.1	Wheat	cytosol	22.68	23.92
TraesCS1D01G031400.1	Wheat	nucleus	26.58	23.37
TraesCS3D01G100800.1	Wheat	plastid	26.21	21.93
TraesCS7D01G309800.1	Wheat	nucleus	12.08	20.83
TraesCS2D01G228000.1	Wheat	nucleus	25.65	18.06
TraesCS5D01G385400.1	Wheat	nucleus	25.46	17.61
TraesCS2D01G363700.1	Wheat	nucleus	25.46	16.39
TraesCS4D01G337100.1	Wheat	nucleus	22.86	14.45

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF275	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS3D01G230300	EnsemblPlants:TraesCS3D01G230300.1	TIGR:cd00079
TIGR:cd00268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:313716028..313718759

Molecular Weight (calculated)

59388.1 Da

IEP (calculated)

10.155

GRAVY (calculated)

-0.211

Length

538 amino acids

Sequence
(BLAST)

001: MSGNPGYAAA PKRQRRRRPR DAEDGSAFPR VVTSRPRGAD QVREVAVVPA EAMDIDAGTS ANAPTGGVDG SYLSDTRFDQ CAVSPLSLQG IKDAGYERLT
101: RVQEATLPVI LQGKDVLAKA KTGTGKTVAF LLPAVELLST LPRSTSINLL VMLPTRELAY QVAVEARKLL KYHSSLGVQV VIGGTKLSQE QRSMRSTPCQ
201: ILVATPGRLI DHLQNTPGFS ARIKGVKVLV LDEADRLLDM GFRRDVEKII AFIPKERQTL LFSATVPAEV REVSHLAMQK DYKFINTVQE GDEETHAQVN
301: QMYMVAPLDL HFSILYGVLK KHIAEDAEYK VIIFCTTAMV TKLVAEILSQ LKLNIREIHS RKSQSARTKV SDEFRKSKGL ILVSSDVSAR GVDYPDVSLV
401: IQVGLPSDRQ QYIHRLGRTG RKGKEGQGIL LLAHWEKHFL SSVNDLSITE TVAPPVNPSI QTEVKGAIRR VEIKTKESAY QAWLGYYNSN KTISRDKSRL
501: VKLAEDFSQS MGLEIVPAIP KLILRKMGLQ NVPGLRSS

Best Arabidopsis Sequence Match ( AT5G08610.1 )
(BLAST)

001: MSSKFPLGVR FITHSLPCTR LASMNSGALI YSFRSVPVLS KAFPFRLKYI GLGSRVNFST RPERSQPEFA RRSGAGGEIR ASKSLIEDEA ELSDWVSDLR
101: TSSLRGKFTS DEDNADPEVV RRNVDRDTSR GPRRGREGQS DRFGGAKRGK EGEMDRFGSP NRRRTSGEPA DSFGNKRLGD REGSRNGRVQ GKSSESSFRG
201: RSDRNVDSGS SFRGRSDKNV DSGSSFRGRN DRNVDSGSSF RGRSDRNVDS GSSFRGRSDR NVDSGSSFRG RNDRNVDSGS SFRGRNDRNV ESGFRREPGS
301: ENNRGLGKQT RGLSLEEEDS SDDDENRVGL GNIDDLPSED SSDEDDENDE PLIKKAASAK AVQTDKPTGE HVKTSDSYLS KTRFDQFPLS PLSLKAIKDA
401: GFETMTVVQE ATLPIILQGK DVLAKAKTGT GKTVAFLLPA IEAVIKSPPA SRDSRQPPII VLVVCPTREL ASQAAAEANT LLKYHPSIGV QVVIGGTKLP
501: TEQRRMQTNP CQILVATPGR LKDHIENTSG FATRLMGVKV LVLDEADHLL DMGFRRDIER IIAAVPKQRQ TFLFSATVPE EVRQICHVAL KRDHEFINCV
601: QEGSGETHQK VTQMYMIASL DRHFSLLHVL LKEHIADNVD YKVIIFCTTA MVTRLVADLL SQLSLNVREI HSRKPQSYRT RVSDEFRKSK AIILVTSDVS
701: ARGVDYPDVS LVVQMGLPSD REQYIHRLGR TGRKGKEGEG VLLLAPWEEY FMSSVKDLPI TKSPLPPIDP EAVKRVQKGL SQVEMKNKEA AYQAWLGYYK
801: SQKMIARDTT RLVELANEFS RSMGLDSPPA IPKNVLGKMG LKNVPGLRTK

Arabidopsis Description

RH26PDE340 [Source:UniProtKB/TrEMBL;Acc:A0A178UFQ6]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.