Factsheet for TraesCS3D01G100800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G116900.1	Wheat	plastid	98.13	98.13
TraesCS3A01G100100.1	Wheat	plastid	97.82	97.67
HORVU3Hr1G018130.7	Barley	plastid	97.2	92.32
Os01t0164500-01	Rice	plastid	81.34	80.83
Zm00001d024719_P001	Maize	nucleus	41.52	78.99
EES00264	Sorghum	nucleus, plastid	78.07	77.95
Zm00001d027279_P001	Maize	nucleus	34.37	77.54
Zm00001d041799_P001	Maize	cytosol	29.7	72.35
Zm00001d039746_P001	Maize	nucleus	78.07	69.24
VIT_13s0067g01900.t01	Wine grape	nucleus	61.12	66.05
KRG97683	Soybean	nucleus	59.1	64.52
GSMUA_Achr8P01870_001	Banana	cytosol	64.7	63.9
AT5G05450.1	Thale cress	nucleus	57.7	62.56
Solyc02g078880.2.1	Tomato	nucleus	56.92	61.62
Bra028757.1-P	Field mustard	nucleus	56.92	61.62
Bra009114.1-P	Field mustard	nucleus	56.14	60.67
PGSC0003DMT400057606	Potato	nucleus	56.45	58.27
KRH31184	Soybean	nucleus	60.19	58.2
AT1G71370.1	Thale cress	nucleus	50.08	57.71
AT1G71280.1	Thale cress	nucleus	40.9	56.56
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	30.95	54.97
TraesCS2D01G131200.1	Wheat	nucleus	21.46	30.13
TraesCS6D01G292400.1	Wheat	nucleus	24.26	28.21
TraesCS6D01G103400.1	Wheat	nucleus	19.13	27.7
TraesCS5D01G050600.1	Wheat	nucleus	23.48	27.01
TraesCS5D01G127000.1	Wheat	nucleus	24.26	26.9
TraesCS3D01G230300.1	Wheat	nucleus	21.93	26.21
TraesCS1D01G031400.1	Wheat	nucleus	24.42	25.65
TraesCS7D01G309800.1	Wheat	nucleus	11.66	24.04
TraesCS3D01G230400.2	Wheat	mitochondrion	21.77	23.81
TraesCS2D01G160100.1	Wheat	cytosol	18.35	23.14
CDX69933	Canola	cytosol	4.51	21.32
TraesCS2D01G228000.1	Wheat	nucleus	24.11	20.29
TraesCS5D01G385400.1	Wheat	nucleus	23.33	19.28
TraesCS2D01G363700.1	Wheat	nucleus	21.77	16.75
TraesCS6D01G392700.1	Wheat	cytosol	21.31	16.27
TraesCS4D01G337100.1	Wheat	nucleus	20.84	15.75
TraesCS7D01G328100.1	Wheat	mitochondrion	23.17	15.54

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF2	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178
SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS3D01G100800	EnsemblPlants:TraesCS3D01G100800.1	TIGR:cd00079	TIGR:cd00268	SEG:seg

Description

No Description!

Coordinates

chr3D:+:53463134..53466419

Molecular Weight (calculated)

71696.2 Da

IEP (calculated)

10.012

GRAVY (calculated)

-0.398

Length

643 amino acids

Sequence
(BLAST)

001: MASSSSPSPA TAAARKRALT EQQFSELTPV LSPEVVEALD RGGFRRCTPV QAATIPLLLT HKDVAVDAAT GSGKTLAFVV PVVEMLRRLP SPPKPHQVLA
101: IIISPTRELS SQIYNVAQPF FATLKGVSSI LLVGGLDIQV ELKKVEEEGA NILVGTPGKL FDIMERLDTL EYKHLEILIL DEADRLLDMG FQKQVTSIIS
201: KLPKLRRTGL FSATQTEAVE ELAKAGLRNP VRVQVKTEAK DGAQQDLGPS KTPLGLRLEY MICEPAKKSS QLVDFLVQNT GKKIMVYFAT CACVDYWSVV
301: LPMLNLLKGS PVIAYHGKMK QGPREKALAS FSALSSGILV CTDVAARGLD IPHVDLIVQY DPPQDPNVFV HRAGRTARYD QEGDAIVFLL PTEDAYVDFL
401: KLRGVPLMER ECSPDIVDIV PQIRTAALED RNIMEKGLRA FVSFVRSYKE HHCSFIFRWK GLEVGKLAME YGLLQIPSMP EVKHNNLSLK GFFPLGNIDF
501: SQIKFKDKTR EKQRQKALKR KAEELANEPP VPEKRIPRER PDKPKRKQTG KQRQTIQSKE DMDELTNEYR LLKKLKRGVI DEDEYEKLTG FGGSDGEGSD
601: GDAAGRGKGK ERRSKEQKKL KQRGGKTGGR RFEVKSKLKS KRR

Best Arabidopsis Sequence Match ( AT5G05450.1 )
(BLAST)

001: MDSSANINKA LTETRFSDLE PPLSGDIIEA LNQSDFEFCT PVQAATIPLL CSYKDVAVDA ATGSGKTLAF VVPLVEILRR STSFPPKPHQ VMGVIISPTR
101: ELSTQIYNVA QPFVSTLANV NSVLLVGGRE VKADMKIIEE EGCNVLIGTP GRLSDIMERM EILDFRNLEI LILDEADRLL EMGFQRQVNY IISRLPKQRR
201: TGLFSATQTE GVEELAKAGL RNPVRVEVRA KSKSESSQQL TNSKTPSGLH LEYMECEADK KSSQLVDLLI KNSDKKLIVF FMTCASVDYW GLVLSKIPAL
301: KSISLIPIHG DMKQNARDKA LASFTKASSG ALLCTDVAAR GLDIPGIDYV VQYDPPQDPN MFNHRAGRTA RLGRQGRAIV FLLPKEEAYV EFMRIRRVPL
401: EERKCSEDAS DVIPIIRSAA MKDRAVMEKG LKAFVSFVRA YKEHHCSFIF RWKDLEIGKL AMGYGLLYLP SMSEVKQHRL SSEGFTPVEG VKFEEIKFKD
501: KYREKQRQQN LQVRKEKRQE EKKEKGKRKR VDASASNDPK KASRKLTGKQ RQTIQTAEDE EVMDRDYKLM IKVKKGLIKE DEYERLTGDD DLF

Arabidopsis Description

RH18DEAD-box ATP-dependent RNA helicase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.