Factsheet for TraesCS1D01G031400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G030500.1	Wheat	nucleus	98.53	98.53
TraesCS1B01G037600.1	Wheat	nucleus	98.2	97.56
HORVU1Hr1G004510.5	Barley	plastid	97.71	90.61
Os05t0110500-02	Rice	nucleus	83.01	85.96
EES18259	Sorghum	nucleus	80.88	82.5
Zm00001d010225_P001	Maize	plasma membrane	68.79	81.91
KRH12590	Soybean	nucleus	57.52	64.83
GSMUA_Achr7P18160_001	Banana	nucleus	61.44	64.38
VIT_11s0016g00630.t01	Wine grape	nucleus	61.93	63.17
PGSC0003DMT400006153	Potato	nucleus	55.07	63.11
KRH37539	Soybean	nucleus	55.07	62.52
PGSC0003DMT400006154	Potato	nucleus	59.64	61.14
Solyc07g042270.2.1	Tomato	nucleus	59.15	60.64
Bra004584.1-P	Field mustard	nucleus	57.68	57.49
AT2G40700.1	Thale cress	nucleus	56.86	57.05
CDX79974	Canola	nucleus	57.68	51.31
CDY23886	Canola	plasma membrane	57.84	50.5
TraesCS6D01G292400.1	Wheat	nucleus	27.45	30.38
TraesCS5D01G127000.1	Wheat	nucleus	28.59	30.17
TraesCS2D01G131200.1	Wheat	nucleus	22.06	29.48
TraesCS5D01G050600.1	Wheat	nucleus	26.63	29.16
TraesCS6D01G103400.1	Wheat	nucleus	20.75	28.6
TraesCS7D01G309800.1	Wheat	nucleus	14.05	27.56
TraesCS3D01G230300.1	Wheat	nucleus	23.37	26.58
TraesCS3D01G100800.1	Wheat	plastid	25.65	24.42
TraesCS2D01G160100.1	Wheat	cytosol	19.93	23.92
TraesCS3D01G230400.2	Wheat	mitochondrion	22.55	23.47
TraesCS2D01G228000.1	Wheat	nucleus	23.69	18.98
TraesCS5D01G385400.1	Wheat	nucleus	23.53	18.51
TraesCS6D01G392700.1	Wheat	cytosol	24.35	17.7
TraesCS4D01G337100.1	Wheat	nucleus	24.18	17.39
TraesCS2D01G363700.1	Wheat	nucleus	22.71	16.63
TraesCS7D01G328100.1	Wheat	mitochondrion	22.39	14.29

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF89	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS1D01G031400	EnsemblPlants:TraesCS1D01G031400.1
TIGR:cd00079	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:12311013..12314727

Molecular Weight (calculated)

68541.3 Da

IEP (calculated)

10.251

GRAVY (calculated)

-0.380

Length

612 amino acids

Sequence
(BLAST)

001: MAAKRKLGRP PPAAAPAAPK AKAKANEDDG EGLFSSRSFA DLGLHPTLCA HLQDKMGFQG PTRIQAQAIP VAMSGQHLLV KAATGTGKTL AYLAPIVHLL
101: QMREPRVERT HGTFALVIVP TRELCLQVYG ITQQLVHRFH WLVPGYVMGG ESRSKEKARL RKGISILIAT PGRLLDHLQH TSSFVYSNLR WIVFDEADSI
201: LELGFGKAVE DILGLLGSRT DASDENKSKT DPMQRQNLLL SATLNEKVNR LANISLKNPV MIGLDEQKKP SERSRALGKK HTSLLSDDEE DIPDKHNNIV
301: EPAVDDFKLP AQLVQRYVKV SCGSRLAVLL TILKSQFERQ VSQKVVVFMS TCDAVDFHHT VLSQLEWSRG LALDTDKKQK FLGCKVFRLH GNMDQEDRKK
401: SYLGFSSEKS AILVCTDVAA RGLDIPKVRC IIQYDSPGEA SEYVHRVGRT ARIGEKGEAL LFLQPVELDY LKDLELHGVS LTEYPFQKVL DGFPVNGEKP
501: LKRKPISLDM HPWILSVQRT LENYVASEAT TNKLARDAFC SWLRAYTAHR GELKKIFMVK KLHLGHVARS FGLKEQPSLV GRSHQVQLKK RKKEQKREGQ
601: GPTKRRKFPT KK

Best Arabidopsis Sequence Match ( AT2G40700.1 )
(BLAST)

001: MMKRAQQSAR ETKQEAKDAS KAKSGLFASC SFSSLGLDTK LSDQLKERMG FEAPTLVQAQ AIPVILSGRD VLVNAPTGTG KTIAYLAPLI HHLQGHSPKV
101: DRSHGTFALV IVPTRELCLQ VYETLEKLLH RFHWIVPGYV MGGEKKAKEK ARLRKGISIL IATPGRLLDH LKNTASFVHK NLRWVIFDEA DSILELGYGK
201: EIEQIIKLLG SGQNEQGEED DIVPKGIQKQ NLLLSATLND KVNDLAKLSL DDPVMIGLDN TKLQQNLSIE SPAAPDSDAE DMVIHVNKSA NPLSEDYGIP
301: SQLVQRYLRV PCGARLVALL SVLKNLFERE ASQKVVVFFS TRDAVDFHYS LLSEFQWPPN SETEEEGTKE LFLKCKTFRL HGSMEQEDRR SAFGTFKTEK
401: QAVLLSTDVA ARGLDFPKVR CIIQYDCPGE ATEYVHRVGR TARIGEKGEA LLFLQPIEID YLKELKKHGA SLTEYPLMKV LDKFPIPGNM PRIKKVLSLE
501: SHPWVISLQR ALESLTYAEP KMKSLAKNAF VSWVRGYAAH KGELKSIFVV KKLHLGHVAK SFALREQPSL VGKSHHKETM KRKRDERQKG QQGKKRKKMS
601: GTGNRSTQKT

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT2G40700]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.