Factsheet for TraesCS6D01G103400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G114900.1	Wheat	nucleus	95.27	92.56
TraesCS6B01G142500.1	Wheat	mitochondrion, nucleus	95.05	87.92
TraesCS2D01G131200.1	Wheat	nucleus	90.09	87.34
Zm00001d048477_P001	Maize	plastid	30.63	72.73
Os03t0669000-01	Rice	cytosol, nucleus, plastid	76.58	72.03
OQU93356	Sorghum	cytosol	72.97	71.37
HORVU6Hr1G020570.1	Barley	plastid	90.32	70.85
Zm00001d014787_P001	Maize	nucleus	72.97	69.68
Os07t0660000-00	Rice	cytosol	66.22	66.07
VIT_01s0010g01890.t01	Wine grape	nucleus	57.88	62.53
KRH48210	Soybean	nucleus	45.05	62.5
KRH65120	Soybean	cytosol	60.59	61.28
Solyc10g007550.2.1	Tomato	cytosol, nucleus	60.14	60.82
CDY47007	Canola	cytosol	60.14	59.47
CDY42845	Canola	cytosol	59.91	59.24
Bra029342.1-P	Field mustard	cytosol	59.68	58.63
AT5G60990.1	Thale cress	nucleus	59.68	58.11
VIT_11s0065g01090.t01	Wine grape	cytosol	62.61	51.58
GSMUA_Achr8P34380_001	Banana	cytosol	63.74	38.93
TraesCS2D01G160100.1	Wheat	cytosol	35.81	31.18
TraesCS6D01G292400.1	Wheat	nucleus	29.28	23.51
TraesCS5D01G127000.1	Wheat	nucleus	30.18	23.1
TraesCS5D01G050600.1	Wheat	nucleus	26.8	21.29
TraesCS3D01G230300.1	Wheat	nucleus	25.68	21.19
TraesCS1D01G031400.1	Wheat	nucleus	28.6	20.75
TraesCS3D01G230400.2	Wheat	mitochondrion	25.45	19.22
TraesCS3D01G100800.1	Wheat	plastid	27.7	19.13
TraesCS5D01G385400.1	Wheat	nucleus	31.98	18.25
TraesCS7D01G309800.1	Wheat	nucleus	11.49	16.35
TraesCS2D01G228000.1	Wheat	nucleus	26.35	15.31
TraesCS2D01G363700.1	Wheat	nucleus	28.38	15.07
TraesCS4D01G337100.1	Wheat	nucleus	28.6	14.92
TraesCS6D01G392700.1	Wheat	cytosol	26.35	13.9
TraesCS7D01G328100.1	Wheat	mitochondrion	25.68	11.89

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF78	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS6D01G103400	EnsemblPlants:TraesCS6D01G103400.1	TIGR:cd00079
TIGR:cd00268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:67377649..67382321

Molecular Weight (calculated)

49585.4 Da

IEP (calculated)

8.681

GRAVY (calculated)

-0.189

Length

444 amino acids

Sequence
(BLAST)

001: MAVDKVVAGG GEVQQSEPEP EPAAEASTFV ELGICPELVE ACDAMGWKQP TKIQVGAIPH ALKGSGKTGA FALPIIQALI EHPQPFFACL PTRELAIQIA
101: EQFEALGSAI GLVCSVLVGG VDRMQQVLSI AKRPHIVVGT PGRLLDHLKD TKGFSLTKLK YLVLDEADKL LNLEFKESLD EILNVIPKER ITYLFSATMT
201: KKVSKLQRAC LRNPVKVLVS SKYSTVDTLK EEWYFVPADY KDCYLVHVLN ELPGSMTMIF VWTCESTRLL ALTLRNLGFK ALSISGQMSQ DKRLGALNKF
301: KAKEFNILIC TDVASRGLDI QGVDVVMNYD IPMNSKDYVH RVGRTARAGQ SGYAVSFVNQ YESLWFKMIE ALLGKEIPVR TADADEILIL REHISDSKRI
401: ALMKLKEDGG HKRRRKTEDE YEEEEEAPRG RRKPRSFKKS KGRR

Best Arabidopsis Sequence Match ( AT1G16280.1 )
(BLAST)

001: MEEPTPEEEG GITIMSKSRK NPKTVVNIQS QKLDSDQNTP QFEKFTNPNP SSDTTSATNF EGLGLAEWAV ETCKELGMRK PTPVQTHCVP KILAGRDVLG
101: LAQTGSGKTA AFALPILHRL AEDPYGVFAL VVTPTRELAF QLAEQFKALG SCLNLRCSVI VGGMDMLTQT MSLVSRPHIV ITTPGRIKVL LENNPDVPPV
201: FSRTKFLVLD EADRVLDVGF QDELRTIFQC LPKSRQTLLF SATMTSNLQA LLEHSSNKAY FYEAYEGLKT VDTLTQQFIF EDKDAKELYL VHILSQMEDK
301: GIRSAMIFVS TCRTCQRLSL MLDELEVENI AMHSLNSQSM RLSALSKFKS GKVPILLATD VASRGLDIPT VDLVINYDIP RDPRDYVHRV GRTARAGRGG
401: LAVSIITETD VKLIHKIEEE VGKKMEPYNK KVITDSLEVT KVSKAKRVAM MKMLDNGFED KVKDRRKLKR KTLADKGLLK KRGKRQKSTE N

Arabidopsis Description

RH36DEAD-box ATP-dependent RNA helicase 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.