Factsheet for VIT_11s0065g01090.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g01890.t01	Wine grape	nucleus	74.95	98.3
Solyc10g007550.2.1	Tomato	cytosol, nucleus	68.65	84.28
KRH65120	Soybean	cytosol	65.12	79.95
KRH48210	Soybean	nucleus	46.57	78.44
CDY42845	Canola	cytosol	63.27	75.95
CDY47007	Canola	cytosol	63.08	75.72
Bra029342.1-P	Field mustard	cytosol	63.27	75.44
AT5G60990.1	Thale cress	nucleus	62.89	74.34
OQU93356	Sorghum	cytosol	54.55	64.76
TraesCS6A01G114900.1	Wheat	nucleus	54.36	64.11
Zm00001d014787_P001	Maize	nucleus	54.17	62.8
TraesCS2A01G128700.1	Wheat	nucleus	53.25	62.66
TraesCS6D01G103400.1	Wheat	nucleus	51.58	62.61
TraesCS2D01G131200.1	Wheat	nucleus	53.06	62.45
Os03t0669000-01	Rice	cytosol, nucleus, plastid	54.17	61.86
KXG22990	Sorghum	cytosol	50.46	61.12
Zm00001d048477_P001	Maize	plastid	21.15	60.96
TraesCS6B01G142500.1	Wheat	mitochondrion, nucleus	53.99	60.62
Os07t0660000-00	Rice	cytosol	48.24	58.43
TraesCS2B01G150800.1	Wheat	mitochondrion	53.8	56.2
HORVU2Hr1G022490.2	Barley	nucleus	50.46	55.17
HORVU6Hr1G020570.1	Barley	plastid	53.99	51.41
GSMUA_Achr8P34380_001	Banana	cytosol	63.45	47.04
VIT_19s0085g00510.t01	Wine grape	cytosol	35.99	39.67
VIT_17s0000g04310.t01	Wine grape	cytosol	28.01	27.45
VIT_06s0004g07260.t01	Wine grape	extracellular, vacuole	7.42	25.0
VIT_13s0067g01900.t01	Wine grape	nucleus	25.97	23.53
VIT_11s0016g00630.t01	Wine grape	nucleus	25.97	23.33
VIT_18s0001g14540.t01	Wine grape	nucleus	27.46	20.22
VIT_05s0049g02360.t01	Wine grape	nucleus	27.27	18.65
VIT_15s0046g01010.t01	Wine grape	plastid	24.68	17.3
VIT_02s0025g03950.t01	Wine grape	mitochondrion	23.38	16.71

Protein Annotations

MapMan:19.2.2.2.1	Gene3D:3.40.50.300	EMBL:AM484499	ProteinID:CAN66431	ProteinID:CAN66431.1	ProteinID:CCB48954
ProteinID:CCB48954.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6H9R1	EMBL:FN595502	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF78	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGR:TC64014	UniParc:UPI000210874C	ArrayExpress:VIT_11s0065g01090
EnsemblPlantsGene:VIT_11s0065g01090	EnsemblPlants:VIT_11s0065g01090.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:+:15146524..15180477

Molecular Weight (calculated)

59645.5 Da

IEP (calculated)

8.887

GRAVY (calculated)

-0.266

Length

539 amino acids

Sequence
(BLAST)

001: MSATGGAAGG QEEDKKPTDQ GAHINLKVKG QIFRMAEDNK EVKSFKDLGI CEQLVEACEN LGWKTPSKIQ AEAIPHALEG KDLIGLAQTG SGKTGAFALP
101: ILQALLDTPQ VLFACVLSPT RELAIQIAEQ FEALGSGIGL KCAVLVGGVD HTQQAIALAK RPHIVVGTPG RLMDHLSNTK GFSLRTMKYL VLDEADRLLN
201: DDFEKAIDEI LSVIPRERKT YLFSATMTKK VRKLQRACLR NPVKIEVASK YSTVDTLKQQ YRFVPAKYKE CYLVYILTEL SGSTTMVFTR TCDATRLLAL
301: LLRNLGLRAI PISGHMSQAK RLGALNKFKA GECNILICTD VASRGLDIPS VDMVINYDIP SNSKVKAEAK IEKELNLISS HEDEELDKMR GFGSGSFPII
401: DTLECDDDGV GEEARVRFLS QNLSLFTLPR VFGDYIHRVG RTARAGRSGV AISLVNQYEL EWYIQIEKLI GKKLPEFPAQ EEEVLLLLER VTEAKRISQM
501: KVKETGGKKK RRGGDEGEEE IDRYLASKNG KSSKKLKKR

Best Arabidopsis Sequence Match ( AT5G60990.1 )
(BLAST)

001: MEEENEVVKT FAELGVREEL VKACERLGWK NPSKIQAEAL PFALEGKDVI GLAQTGSGKT GAFAIPILQA LLEYVYDSEP KKGRRPDPAF FACVLSPTRE
101: LAIQIAEQFE ALGADISLRC AVLVGGIDRM QQTIALGKRP HVIVATPGRL WDHMSDTKGF SLKSLKYLVL DEADRLLNED FEKSLNQILE EIPLERKTFL
201: FSATMTKKVR KLQRACLRNP VKIEAASKYS TVDTLKQQYR FVAAKYKDCY LVYILSEMPE STSMIFTRTC DGTRFLALVL RSLGFRAIPI SGQMTQSKRL
301: GALNKFKAGE CNILVCTDVA SRGLDIPSVD VVINYDIPTN SKDYIHRVGR TARAGRSGVG ISLVNQYELE WYIQIEKLIG KKLPEYPAEE DEVLSLLERV
401: AEAKKLSAMN MKESGGRKRR GEDDEESERF LGGNKDRGNK ERGGNKDKKS SKKFKR

Arabidopsis Description

RH10DEAD-box ATP-dependent RNA helicase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.