Factsheet for GSMUA_Achr8P34380_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	cytosol
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g007550.2.1	Tomato	cytosol, nucleus	46.35	76.77
VIT_01s0010g01890.t01	Wine grape	nucleus	43.05	76.16
KRH65120	Soybean	cytosol	44.02	72.89
CDY42845	Canola	cytosol	44.15	71.49
CDY47007	Canola	cytosol	44.15	71.49
KRH48210	Soybean	nucleus	31.22	70.94
Bra029342.1-P	Field mustard	cytosol	44.02	70.8
AT5G60990.1	Thale cress	nucleus	44.02	70.18
TraesCS2D01G131200.1	Wheat	nucleus	41.68	66.16
TraesCS2A01G128700.1	Wheat	nucleus	41.68	66.16
TraesCS6A01G114900.1	Wheat	nucleus	40.85	64.99
OQU93356	Sorghum	cytosol	40.44	64.76
Os03t0669000-01	Rice	cytosol, nucleus, plastid	41.68	64.19
TraesCS6D01G103400.1	Wheat	nucleus	38.93	63.74
Zm00001d014787_P001	Maize	nucleus	40.72	63.66
VIT_11s0065g01090.t01	Wine grape	cytosol	47.04	63.45
KXG22990	Sorghum	cytosol	38.65	63.15
TraesCS6B01G142500.1	Wheat	mitochondrion, nucleus	40.72	61.67
Os07t0660000-00	Rice	cytosol	37.55	61.35
Zm00001d048477_P001	Maize	plastid	15.68	60.96
TraesCS2B01G150800.1	Wheat	mitochondrion	42.23	59.5
HORVU2Hr1G022490.2	Barley	nucleus	38.79	57.2
HORVU6Hr1G020570.1	Barley	plastid	42.23	54.24
GSMUA_Achr5P09910_001	Banana	nucleus	21.87	33.54
GSMUA_Achr10P...	Banana	cytosol	20.36	28.63
GSMUA_Achr3P14380_001	Banana	cytosol	15.96	25.95
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	19.67	25.63
GSMUA_Achr7P18160_001	Banana	nucleus	18.84	23.46
GSMUA_Achr8P01870_001	Banana	cytosol	18.29	20.43
GSMUA_Achr8P12970_001	Banana	nucleus	20.77	19.71
GSMUA_Achr6P00390_001	Banana	cytosol, mitochondrion	18.29	18.12
GSMUA_Achr8P04210_001	Banana	cytosol	18.02	17.7
GSMUA_Achr5P10150_001	Banana	nucleus	18.57	17.53
GSMUA_Achr10P...	Banana	mitochondrion	17.88	17.17
GSMUA_Achr9P14580_001	Banana	nucleus	19.26	17.05

Protein Annotations

Gene3D:2.70.98.10	Gene3D:3.40.50.300	MapMan:35.1	InterPro:Aldose_1/G6P_1-epimerase	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:GH-type_carb-bd
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016853
GO:GO:0030246	EnsemblPlantsGene:GSMUA_Achr8G34380_001	EnsemblPlants:GSMUA_Achr8P34380_001	EnsemblPlants:GSMUA_Achr8T34380_001	InterPro:Gal_mutarotase_sf_dom	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:IPR014718	UniProt:M0TW40
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF01263	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF78	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF74650	UniParc:UPI000295F394	SEG:seg

Description

DEAD-box ATP-dependent RNA helicase 10 [Source:GMGC_GENE;Acc:GSMUA_Achr8G34380_001]

Coordinates

chr8:-:35268634..35283969

Molecular Weight (calculated)

80490.0 Da

IEP (calculated)

8.894

GRAVY (calculated)

-0.225

Length

727 amino acids

Sequence
(BLAST)

001: MSIAVIVIVA CQSADNDTTN FGALVGRVAN RIANARFTLN GRTYHLLPND GNNTLHGGPK GFGRVIWTVK DKVDGEYPYI TLYYRSVDGE QGFPGDLDVY
101: VTYKIDDDFV LSVIMHAVPL TKPTPINLAQ HTYWNLGGHE SGSILEDRIK IFASHITPVN DQLIPTGEIR SVSGTPFDFR EPAKIGSKIG RVPGGYDINY
201: VLSSPADVQG VRKVAVVEDG RGSGRVLELW ANQPGVQFYT GNFLKHERGK NGHYYKIHDG LCLETQGFPD SVNHPKFPNQ IYSPGQGRFP EMAEDESPQT
301: FKTLGVREEL VEACESLGWK APTKIQIDSI PYALEGKDII GLAQTGSGKT GAFAIPIIQA LLETPQPFFA CVLSPTRELA IQIAEQFEAL GSGIGVKCTV
401: LVGGVDMTQQ AISLGKRPHI VVATPGRLLD HLTNTKGFSL RTIKYLVLDE ADRLLNLEFE KAIDDILKVI PAERKTYLFS ATMTKKVSKL QRACLRNPVK
501: IEAASKYSTV DTLKQQFRLV PAKYKDCYLV YILTEMSGSM SMVFTRTCES TRLLSLVLRN IGMNAIPISG QMSQAKRLGA LNRFKSGNCN ILICTDVASR
601: GLDIPSVDVV INYDIPTNSK DYVHRVGRTA RAGRSGLAIS LVNQYEVEWY LQIEQLIGKK LPEYPANETE VLIYLERVSD AKRIALMKIK DSNGNKKRKK
701: VEEDGDEAEE YVGISKKVKA SKRSKRW

Best Arabidopsis Sequence Match ( AT5G60990.1 )
(BLAST)

001: MEEENEVVKT FAELGVREEL VKACERLGWK NPSKIQAEAL PFALEGKDVI GLAQTGSGKT GAFAIPILQA LLEYVYDSEP KKGRRPDPAF FACVLSPTRE
101: LAIQIAEQFE ALGADISLRC AVLVGGIDRM QQTIALGKRP HVIVATPGRL WDHMSDTKGF SLKSLKYLVL DEADRLLNED FEKSLNQILE EIPLERKTFL
201: FSATMTKKVR KLQRACLRNP VKIEAASKYS TVDTLKQQYR FVAAKYKDCY LVYILSEMPE STSMIFTRTC DGTRFLALVL RSLGFRAIPI SGQMTQSKRL
301: GALNKFKAGE CNILVCTDVA SRGLDIPSVD VVINYDIPTN SKDYIHRVGR TARAGRSGVG ISLVNQYELE WYIQIEKLIG KKLPEYPAEE DEVLSLLERV
401: AEAKKLSAMN MKESGGRKRR GEDDEESERF LGGNKDRGNK ERGGNKDKKS SKKFKR

Arabidopsis Description

RH10DEAD-box ATP-dependent RNA helicase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.