CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU93356	Sorghum	cytosol	68.31	66.96
KRH65120	Soybean	cytosol	60.9	61.73
VIT_01s0010g01890.t01	Wine grape	nucleus	56.4	61.07
Solyc10g007550.2.1	Tomato	cytosol, nucleus	60.22	61.05
CDY42845	Canola	cytosol	60.0	59.47
CDY47007	Canola	cytosol	60.0	59.47
Bra029342.1-P	Field mustard	cytosol	59.78	58.85
AT5G60990.1	Thale cress	nucleus	60.0	58.55
KRH48210	Soybean	nucleus	41.12	57.19
VIT_11s0065g01090.t01	Wine grape	cytosol	61.12	50.46
GSMUA_Achr8P34380_001	Banana	cytosol	63.15	38.65
EER99761	Sorghum	cytosol	40.0	35.46
KXG37786	Sorghum	nucleus	25.62	25.17
EER90714	Sorghum	nucleus	31.01	22.15
EES03287	Sorghum	cytosol	27.64	21.93
EES18259	Sorghum	nucleus	29.44	21.83
EES01082	Sorghum	mitochondrion, plastid	28.76	21.77
EES00264	Sorghum	nucleus, plastid	30.56	21.12
OQU76528	Sorghum	nucleus	28.09	20.87
OQU76491	Sorghum	nucleus	26.29	17.84
KXG35997	Sorghum	nucleus	31.24	17.51
EER99450	Sorghum	nucleus	27.87	16.64
OQU80427	Sorghum	nucleus	31.01	16.18
OQU81941	Sorghum	nucleus	29.89	15.8
EES07789	Sorghum	mitochondrion	28.54	15.43

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1B6PB63	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KXG22990	ProteinID:KXG22990	ProteinID:KXG22990.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF78	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3008G041300	SUPFAM:SSF52540
UniParc:UPI00081ABE81	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:3989917..3996257

Molecular Weight (calculated)

49361.5 Da

IEP (calculated)

8.982

GRAVY (calculated)

-0.045

Length

445 amino acids

Sequence
(BLAST)

001: MIAASGGDAQ VTAHRVSTFA DLGVCSELVN ACGTLGWKQP TKIQSEAIPY ALKGMDLIAL AQTGSGKTAA FALPILQALL EHRRPFFACV LSPTRELAIQ
101: IAEQFEALGS AIGLVCSVLV GGVDRMQQVI SLARHPHIIV ATPGRLLDHL TDTKGFSLNK IKYLVLDEAD VLLDMEFEKS LNDILKVIPK ERRTFLFSAT
201: MTDKVKKLQR ACLRNPVKLK VSCKYSTVDT LREEFYLVPA NDKDCCLVYV LNKIPGSMIM IFTETCYSSR LLALMLRNLG FEAIFINGKM SQDKRLGALN
301: RFKSKGCNII TCTDVASRGL DIQGVDVVIN YDIPSLKSYV HRVGRTARAG QSGYALSLVN QYEVLRFKYI EKLLGKEISK SEVDECELKI LKECVCDSKR
401: IALKVKGDGC KRPRSMQDDE DGMEGHDPFC SRRSSGMSIN RSRRR

Best Arabidopsis Sequence Match ( AT5G60990.1 )
(BLAST)

001: MEEENEVVKT FAELGVREEL VKACERLGWK NPSKIQAEAL PFALEGKDVI GLAQTGSGKT GAFAIPILQA LLEYVYDSEP KKGRRPDPAF FACVLSPTRE
101: LAIQIAEQFE ALGADISLRC AVLVGGIDRM QQTIALGKRP HVIVATPGRL WDHMSDTKGF SLKSLKYLVL DEADRLLNED FEKSLNQILE EIPLERKTFL
201: FSATMTKKVR KLQRACLRNP VKIEAASKYS TVDTLKQQYR FVAAKYKDCY LVYILSEMPE STSMIFTRTC DGTRFLALVL RSLGFRAIPI SGQMTQSKRL
301: GALNKFKAGE CNILVCTDVA SRGLDIPSVD VVINYDIPTN SKDYIHRVGR TARAGRSGVG ISLVNQYELE WYIQIEKLIG KKLPEYPAEE DEVLSLLERV
401: AEAKKLSAMN MKESGGRKRR GEDDEESERF LGGNKDRGNK ERGGNKDKKS SKKFKR

Arabidopsis Description

RH10DEAD-box ATP-dependent RNA helicase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.