Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42845 | Canola | cytosol | 94.08 | 95.55 |
| Bra029342.1-P | Field mustard | cytosol | 94.3 | 95.13 |
| CDY47007 | Canola | cytosol | 93.64 | 95.1 |
| Solyc10g007550.2.1 | Tomato | cytosol, nucleus | 76.75 | 79.73 |
| VIT_01s0010g01890.t01 | Wine grape | nucleus | 69.96 | 77.62 |
| KRH65120 | Soybean | cytosol | 74.56 | 77.45 |
| KRH48210 | Soybean | nucleus | 52.85 | 75.31 |
| VIT_11s0065g01090.t01 | Wine grape | cytosol | 74.34 | 62.89 |
| OQU93356 | Sorghum | cytosol | 61.4 | 61.67 |
| TraesCS6A01G114900.1 | Wheat | nucleus | 61.4 | 61.27 |
| TraesCS2A01G128700.1 | Wheat | nucleus | 61.4 | 61.14 |
| TraesCS2D01G131200.1 | Wheat | nucleus | 61.18 | 60.92 |
| KXG22990 | Sorghum | cytosol | 58.55 | 60.0 |
| Zm00001d014787_P001 | Maize | nucleus | 61.18 | 60.0 |
| TraesCS6D01G103400.1 | Wheat | nucleus | 58.11 | 59.68 |
| Os03t0669000-01 | Rice | cytosol, nucleus, plastid | 61.18 | 59.11 |
| Os07t0660000-00 | Rice | cytosol | 57.02 | 58.43 |
| TraesCS6B01G142500.1 | Wheat | mitochondrion, nucleus | 60.96 | 57.92 |
| Zm00001d048477_P001 | Maize | plastid | 23.25 | 56.68 |
| TraesCS2B01G150800.1 | Wheat | mitochondrion | 60.96 | 53.88 |
| HORVU2Hr1G022490.2 | Barley | nucleus | 57.24 | 52.94 |
| HORVU6Hr1G020570.1 | Barley | plastid | 60.75 | 48.94 |
| GSMUA_Achr8P34380_001 | Banana | cytosol | 70.18 | 44.02 |
| AT1G16280.1 | Thale cress | nucleus | 40.35 | 37.47 |
| AT3G18600.1 | Thale cress | nucleus | 32.89 | 26.41 |
| AT5G65900.1 | Thale cress | nucleus | 33.99 | 24.49 |
| AT1G71370.1 | Thale cress | nucleus | 29.17 | 23.84 |
| AT1G71280.1 | Thale cress | nucleus | 23.25 | 22.8 |
| AT5G08620.1 | Thale cress | nucleus | 28.07 | 22.74 |
| AT5G05450.1 | Thale cress | nucleus | 29.17 | 22.43 |
| AT2G40700.1 | Thale cress | nucleus | 29.82 | 22.3 |
| AT5G63630.2 | Thale cress | mitochondrion, plastid | 28.73 | 18.3 |
| AT5G54910.1 | Thale cress | nucleus | 29.61 | 18.27 |
| AT4G16630.1 | Thale cress | nucleus | 31.36 | 18.12 |
| AT3G16840.2 | Thale cress | nucleus | 31.58 | 17.41 |
| AT1G77030.1 | Thale cress | nucleus | 29.61 | 15.98 |
| AT5G08610.1 | Thale cress | mitochondrion, plastid | 28.51 | 15.29 |
| AT1G63250.1 | Thale cress | mitochondrion | 25.88 | 14.79 |
| AT2G07750.1 | Thale cress | plastid | 25.66 | 13.85 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:836220 | ProteinID:AED97408.1 | EMBL:AJ010462 | EMBL:AK117799 |
| ArrayExpress:AT5G60990 | EnsemblPlantsGene:AT5G60990 | RefSeq:AT5G60990 | TAIR:AT5G60990 | RefSeq:AT5G60990-TAIR-G | EnsemblPlants:AT5G60990.1 |
| TAIR:AT5G60990.1 | EMBL:AY088068 | Unigene:At.20430 | ProteinID:BAB10648.1 | EMBL:BT005375 | InterPro:DEAD/DEAH_box_helicase_dom |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010501 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | RefSeq:NP_568931.1 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF78 | UniProt:Q8GY84 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI00000A2A0B | SEG:seg | : | : | : |
Description
RH10DEAD-box ATP-dependent RNA helicase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY84]
Coordinates
chr5:-:24546329..24549339
Molecular Weight (calculated)
51149.9 Da
IEP (calculated)
9.323
GRAVY (calculated)
-0.374
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEENEVVKT FAELGVREEL VKACERLGWK NPSKIQAEAL PFALEGKDVI GLAQTGSGKT GAFAIPILQA LLEYVYDSEP KKGRRPDPAF FACVLSPTRE
101: LAIQIAEQFE ALGADISLRC AVLVGGIDRM QQTIALGKRP HVIVATPGRL WDHMSDTKGF SLKSLKYLVL DEADRLLNED FEKSLNQILE EIPLERKTFL
201: FSATMTKKVR KLQRACLRNP VKIEAASKYS TVDTLKQQYR FVAAKYKDCY LVYILSEMPE STSMIFTRTC DGTRFLALVL RSLGFRAIPI SGQMTQSKRL
301: GALNKFKAGE CNILVCTDVA SRGLDIPSVD VVINYDIPTN SKDYIHRVGR TARAGRSGVG ISLVNQYELE WYIQIEKLIG KKLPEYPAEE DEVLSLLERV
401: AEAKKLSAMN MKESGGRKRR GEDDEESERF LGGNKDRGNK ERGGNKDKKS SKKFKR
101: LAIQIAEQFE ALGADISLRC AVLVGGIDRM QQTIALGKRP HVIVATPGRL WDHMSDTKGF SLKSLKYLVL DEADRLLNED FEKSLNQILE EIPLERKTFL
201: FSATMTKKVR KLQRACLRNP VKIEAASKYS TVDTLKQQYR FVAAKYKDCY LVYILSEMPE STSMIFTRTC DGTRFLALVL RSLGFRAIPI SGQMTQSKRL
301: GALNKFKAGE CNILVCTDVA SRGLDIPSVD VVINYDIPTN SKDYIHRVGR TARAGRSGVG ISLVNQYELE WYIQIEKLIG KKLPEYPAEE DEVLSLLERV
401: AEAKKLSAMN MKESGGRKRR GEDDEESERF LGGNKDRGNK ERGGNKDKKS SKKFKR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.