Factsheet for Bra029342.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42845	Canola	cytosol	99.11	99.78
CDY47007	Canola	cytosol	98.67	99.33
AT5G60990.1	Thale cress	nucleus	95.13	94.3
Solyc10g007550.2.1	Tomato	cytosol, nucleus	77.21	79.5
VIT_01s0010g01890.t01	Wine grape	nucleus	70.58	77.62
KRH65120	Soybean	cytosol	75.0	77.22
KRH48210	Soybean	nucleus	53.32	75.31
VIT_11s0065g01090.t01	Wine grape	cytosol	75.44	63.27
OQU93356	Sorghum	cytosol	62.83	62.56
TraesCS6A01G114900.1	Wheat	nucleus	62.17	61.49
TraesCS2A01G128700.1	Wheat	nucleus	61.95	61.14
TraesCS2D01G131200.1	Wheat	nucleus	61.73	60.92
Zm00001d014787_P001	Maize	nucleus	62.17	60.43
KXG22990	Sorghum	cytosol	58.85	59.78
TraesCS6D01G103400.1	Wheat	nucleus	58.63	59.68
Os03t0669000-01	Rice	cytosol, nucleus, plastid	61.28	58.69
TraesCS6B01G142500.1	Wheat	mitochondrion, nucleus	61.73	58.12
Zm00001d048477_P001	Maize	plastid	23.89	57.75
Os07t0660000-00	Rice	cytosol	56.86	57.75
TraesCS2B01G150800.1	Wheat	mitochondrion	61.5	53.88
HORVU2Hr1G022490.2	Barley	nucleus	57.96	53.14
HORVU6Hr1G020570.1	Barley	plastid	61.28	48.94
GSMUA_Achr8P34380_001	Banana	cytosol	70.8	44.02
Bra026724.1-P	Field mustard	nucleus	42.04	39.09
Bra037574.1-P	Field mustard	nucleus	32.96	26.33
Bra022336.1-P	Field mustard	nucleus	32.74	26.06
Bra024428.1-P	Field mustard	nucleus	32.74	25.04
Bra001713.1-P	Field mustard	nucleus	33.19	24.75
Bra028652.1-P	Field mustard	nucleus	28.54	23.84
Bra028757.1-P	Field mustard	nucleus	30.31	23.06
Bra009114.1-P	Field mustard	nucleus	30.09	22.86
Bra004584.1-P	Field mustard	nucleus	30.75	22.64
Bra009356.1-P	Field mustard	cytosol	28.1	22.64
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	29.87	21.46
Bra002946.1-P	Field mustard	nucleus	30.09	18.28
Bra038650.1-P	Field mustard	mitochondrion	29.2	17.77
Bra040743.1-P	Field mustard	nucleus	31.64	16.36
Bra009355.1-P	Field mustard	mitochondrion, plastid	27.21	16.14
Bra003691.1-P	Field mustard	cytosol	28.98	15.38
Bra027808.1-P	Field mustard	mitochondrion	25.89	14.98
Bra038492.1-P	Field mustard	nucleus	28.1	13.99

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra029342	EnsemblPlants:Bra029342.1	EnsemblPlants:Bra029342.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M4EKM5	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF78	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00025457EA	SEG:seg

Description

AT5G60990 (E=2e-236) | DEAD/DEAH box helicase, putative (RH10)

Coordinates

chrA02:-:25762713..25765226

Molecular Weight (calculated)

50604.2 Da

IEP (calculated)

9.315

GRAVY (calculated)

-0.392

Length

452 amino acids

Sequence
(BLAST)

001: MEEESEVVKT FAELGVREEL VKACERLGWN NPSKIQAEAL PYALEGKDVI GLAQTGSGKT GAFALPILQA LLEYVNNAEP KKGRRPDPAF FACVLSPTRE
101: LAIQIAEQFE ALGSDISLRC AVLVGGIDRM QQTIALGKRP HVIVATPGRL WDHMSDTKGF SLKTLKYLVL DEADRLLNED FEKSLNQILE EIPRDRKTYL
201: FSATMTKKVR KLQRACLRNP VKIEAASKYS TVDTLKQQYR FVAAKYKDCY LVYILTEMPD STSMIFTRTC DGTRFMALML RSLGFRAIPI SGQMTQSKRL
301: GALNKFKAGE CNILVCTDVA SRGLDIPSVD MVINYDIPTN SKDYIHRVGR TARAGRSGVG ISLVNQYELE WYLQIEKLIG KKLPEYPAEE DEVLSLLERV
401: SEAKKLSAMN MKESGGRNKR RGEDDEESER FLGGGNKGGN KGDKKSSKKF KR

Best Arabidopsis Sequence Match ( AT5G60990.1 )
(BLAST)

001: MEEENEVVKT FAELGVREEL VKACERLGWK NPSKIQAEAL PFALEGKDVI GLAQTGSGKT GAFAIPILQA LLEYVYDSEP KKGRRPDPAF FACVLSPTRE
101: LAIQIAEQFE ALGADISLRC AVLVGGIDRM QQTIALGKRP HVIVATPGRL WDHMSDTKGF SLKSLKYLVL DEADRLLNED FEKSLNQILE EIPLERKTFL
201: FSATMTKKVR KLQRACLRNP VKIEAASKYS TVDTLKQQYR FVAAKYKDCY LVYILSEMPE STSMIFTRTC DGTRFLALVL RSLGFRAIPI SGQMTQSKRL
301: GALNKFKAGE CNILVCTDVA SRGLDIPSVD VVINYDIPTN SKDYIHRVGR TARAGRSGVG ISLVNQYELE WYIQIEKLIG KKLPEYPAEE DEVLSLLERV
401: AEAKKLSAMN MKESGGRKRR GEDDEESERF LGGNKDRGNK ERGGNKDKKS SKKFKR

Arabidopsis Description

RH10DEAD-box ATP-dependent RNA helicase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.