Factsheet for Bra009355.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009356.1-P	Field mustard	cytosol	60.37	82.0
Bra028652.1-P	Field mustard	nucleus	55.25	77.82
AT5G08610.1	Thale cress	mitochondrion, plastid	85.56	76.71
Bra038650.1-P	Field mustard	mitochondrion	64.83	66.49
Os01t0618500-01	Rice	nucleus	45.54	64.74
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	44.75	63.38
TraesCS3A01G222500.1	Wheat	nucleus, plastid	44.09	62.45
EES03287	Sorghum	cytosol	45.93	62.39
TraesCS3B01G252700.2	Wheat	nucleus	38.98	62.26
TraesCS3D01G230300.1	Wheat	nucleus	43.83	62.08
Zm00001d044208_P001	Maize	plastid	47.64	61.95
EES01082	Sorghum	mitochondrion, plastid	47.51	61.56
Os01t0618400-01	Rice	nucleus, plasma membrane	47.77	61.28
VIT_15s0046g01010.t01	Wine grape	plastid	61.81	61.25
Zm00001d044203_P001	Maize	plasma membrane	44.88	61.07
KRH47920	Soybean	nucleus	55.91	60.6
TraesCS3D01G230400.2	Wheat	mitochondrion	46.19	59.86
TraesCS3A01G222700.1	Wheat	mitochondrion	46.06	59.69
TraesCS3B01G252600.1	Wheat	plastid	45.67	59.49
OQU76491	Sorghum	nucleus	48.16	55.95
GSMUA_Achr10P...	Banana	mitochondrion	54.07	54.43
KRH06491	Soybean	nucleus	57.09	53.97
CDX69935	Canola	mitochondrion	96.85	53.52
GSMUA_Achr8P04210_001	Banana	cytosol	51.84	53.38
CDY21554	Canola	mitochondrion	94.88	53.2
Solyc01g095740.2.1	Tomato	nucleus	59.97	52.53
PGSC0003DMT400000611	Potato	mitochondrion	58.14	50.86
Zm00001d046097_P001	Maize	mitochondrion	53.15	43.27
Os06t0526600-01	Rice	mitochondrion	51.31	42.36
TraesCS7D01G328100.1	Wheat	mitochondrion	52.23	41.5
TraesCS7A01G350700.1	Wheat	mitochondrion	52.23	41.12
TraesCS7B01G232200.1	Wheat	mitochondrion	52.1	40.97
Bra027808.1-P	Field mustard	mitochondrion	39.76	38.8
Bra022336.1-P	Field mustard	nucleus	20.34	27.29
Bra029342.1-P	Field mustard	cytosol	16.14	27.21
Bra037574.1-P	Field mustard	nucleus	20.08	27.03
Bra024428.1-P	Field mustard	nucleus	20.21	26.06
Bra001713.1-P	Field mustard	nucleus	20.34	25.58
Bra026724.1-P	Field mustard	nucleus	16.01	25.1
Bra028757.1-P	Field mustard	nucleus	18.5	23.74
Bra009114.1-P	Field mustard	nucleus	18.5	23.7
Bra004584.1-P	Field mustard	nucleus	18.64	23.13
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	16.93	20.51
Bra002946.1-P	Field mustard	nucleus	18.9	19.35
Bra040743.1-P	Field mustard	nucleus	19.82	17.28
Bra038492.1-P	Field mustard	nucleus	17.72	14.87
Bra003691.1-P	Field mustard	cytosol	16.01	14.32

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra009355	EnsemblPlants:Bra009355.1	EnsemblPlants:Bra009355.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4CYQ8	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF528	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002543B70
SEG:seg	:	:	:	:	:

Description

AT5G08610 (E=2e-273) | DEAD box RNA helicase (RH26)

Coordinates

chrA10:+:16315044..16318468

Molecular Weight (calculated)

84930.8 Da

IEP (calculated)

9.840

GRAVY (calculated)

-0.501

Length

762 amino acids

Sequence
(BLAST)

001: MPLKFPLGVR FITHSLPCTH LASSMNSAAL IYSFRAVPVI SKALPSRLTC LGLCSRVSFS TRPEFGRRGE IRASKSLIED EAELSDWVSD LRTSSVRGKF
101: TSDEDEAVQE RVRRNVERDD GRGPPRRGRE GQADRFGVSR RGKEGEVDRF GGSRRGKEGE IDRFGDSNRR RTEPVRNNRF GDREGARNGR VQGRSGESSF
201: RGRNERNVDS GFRRERGMET NKGLGKQTRG LRQEEEDSSD EVVLGGIDDL LSEVSGDDDS EDDEVFVGKV VKGVEADMPR TDTAKTSDSY LSKTRFDQFP
301: LSPLSLRAIK DAGFETMTVV QEATLPIILK GKDVLAKAKT GTGKTVAFLL PSIEAVIKSP PASRDSRQSP IVVLVVCPTR ELASQAAAEA NTLLKYHSSI
401: GVQVVIGGTK LPTEQRRMQA NPCQILVATP GRLKDHIENT SGFATRLNGV KVLVLDEADH LLDMGFRRDI ERIIAAVPKQ RQTFLFSATV PEEVRQICHI
501: ALKRDHEFIN CVQEGSGETH QKVKQMYMIA SLDRHFSLLY VLLKEHMADN PDYKVIIFCT TAMVTRLVAD LLGQLSLNVR EIHSRKPQGY RTKVSDEFRK
601: SKSIILVTSD VSARGVDYPD VSLVVQMGLP SDREQYIHRL GRTGRKGKEG EGVLMLAPWE EYFLSSVKDL PINKSPLPPV DPEAVKKVQR GLNQVEMKNK
701: EAAYQAWLGY YKSQKMIARD TTRLVELANE FSRSMGLDMP PAIPKNVLGK MGLKNVPGLR TK

Best Arabidopsis Sequence Match ( AT5G08610.1 )
(BLAST)

001: MSSKFPLGVR FITHSLPCTR LASMNSGALI YSFRSVPVLS KAFPFRLKYI GLGSRVNFST RPERSQPEFA RRSGAGGEIR ASKSLIEDEA ELSDWVSDLR
101: TSSLRGKFTS DEDNADPEVV RRNVDRDTSR GPRRGREGQS DRFGGAKRGK EGEMDRFGSP NRRRTSGEPA DSFGNKRLGD REGSRNGRVQ GKSSESSFRG
201: RSDRNVDSGS SFRGRSDKNV DSGSSFRGRN DRNVDSGSSF RGRSDRNVDS GSSFRGRSDR NVDSGSSFRG RNDRNVDSGS SFRGRNDRNV ESGFRREPGS
301: ENNRGLGKQT RGLSLEEEDS SDDDENRVGL GNIDDLPSED SSDEDDENDE PLIKKAASAK AVQTDKPTGE HVKTSDSYLS KTRFDQFPLS PLSLKAIKDA
401: GFETMTVVQE ATLPIILQGK DVLAKAKTGT GKTVAFLLPA IEAVIKSPPA SRDSRQPPII VLVVCPTREL ASQAAAEANT LLKYHPSIGV QVVIGGTKLP
501: TEQRRMQTNP CQILVATPGR LKDHIENTSG FATRLMGVKV LVLDEADHLL DMGFRRDIER IIAAVPKQRQ TFLFSATVPE EVRQICHVAL KRDHEFINCV
601: QEGSGETHQK VTQMYMIASL DRHFSLLHVL LKEHIADNVD YKVIIFCTTA MVTRLVADLL SQLSLNVREI HSRKPQSYRT RVSDEFRKSK AIILVTSDVS
701: ARGVDYPDVS LVVQMGLPSD REQYIHRLGR TGRKGKEGEG VLLLAPWEEY FMSSVKDLPI TKSPLPPIDP EAVKRVQKGL SQVEMKNKEA AYQAWLGYYK
801: SQKMIARDTT RLVELANEFS RSMGLDSPPA IPKNVLGKMG LKNVPGLRTK

Arabidopsis Description

RH26PDE340 [Source:UniProtKB/TrEMBL;Acc:A0A178UFQ6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.