Factsheet for Bra040743.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53643	Canola	nucleus	94.85	98.22
CDY50846	Canola	nucleus	92.79	96.66
AT4G16630.1	Thale cress	nucleus	79.98	88.59
Bra038492.1-P	Field mustard	nucleus	76.54	73.68
VIT_18s0001g14540.t01	Wine grape	nucleus	58.92	70.36
KRH37947	Soybean	plastid	47.25	70.12
KRH46113	Soybean	nucleus	59.73	68.96
KRG98832	Soybean	nucleus	59.38	68.38
KRH37970	Soybean	cytosol	24.94	68.12
Solyc04g081580.2.1	Tomato	nucleus	57.89	68.01
PGSC0003DMT400025551	Potato	nucleus	57.78	67.79
GSMUA_Achr8P12970_001	Banana	nucleus	55.38	63.19
Zm00001d021127_P001	Maize	nucleus, plasma membrane	53.43	60.65
Os12t0481100-01	Rice	nucleus	55.49	60.47
TraesCS5A01G375900.1	Wheat	nucleus	53.55	60.15
TraesCS5D01G385400.1	Wheat	nucleus	53.55	60.15
TraesCS5B01G378100.1	Wheat	nucleus	53.55	60.08
KXG35997	Sorghum	nucleus	54.23	59.7
Zm00001d006113_P001	Maize	nucleus	53.89	59.7
HORVU5Hr1G093160.3	Barley	nucleus	53.43	56.2
Bra029342.1-P	Field mustard	cytosol	16.36	31.64
Bra026724.1-P	Field mustard	nucleus	17.51	31.48
Bra028652.1-P	Field mustard	nucleus	15.56	25.14
Bra009356.1-P	Field mustard	cytosol	16.02	24.96
Bra037574.1-P	Field mustard	nucleus	15.9	24.56
Bra022336.1-P	Field mustard	nucleus	15.68	24.12
Bra004584.1-P	Field mustard	nucleus	16.82	23.94
Bra028757.1-P	Field mustard	nucleus	16.02	23.57
Bra009114.1-P	Field mustard	nucleus	16.02	23.53
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	16.82	23.37
Bra024428.1-P	Field mustard	nucleus	15.56	23.01
Bra001713.1-P	Field mustard	nucleus	15.68	22.61
Bra038650.1-P	Field mustard	mitochondrion	17.28	20.32
Bra009355.1-P	Field mustard	mitochondrion, plastid	17.28	19.82
Bra002946.1-P	Field mustard	nucleus	16.7	19.62
Bra003691.1-P	Field mustard	cytosol	18.65	19.13
Bra027808.1-P	Field mustard	mitochondrion	15.33	17.16

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra040743	EnsemblPlants:Bra040743.1	EnsemblPlants:Bra040743.1-P	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4FI14
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF541	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000253E866	SEG:seg	:	:

Description

AT4G16630 (E=2e-266) | DEAD/DEAH box helicase, putative (RH28)

Coordinates

chrScaffold000247:-:31599..37237

Molecular Weight (calculated)

98987.8 Da

IEP (calculated)

5.008

GRAVY (calculated)

-0.745

Length

874 amino acids

Sequence
(BLAST)

001: MSGAFFYDAA SDDDLDFLNH EEESSDEDVA EERKARAEAG GEDEEDSEVE DEDDDEEEED EKTTKKGSTD AQSPWDFASY SSSVGEEHAR RHTTSIDEKI
101: SKAIKHRPLP ISAEEVEEEE EEEDEEDVSE AEPDKQEEYL SEDEEAADSK ADNVAAKPFF STVDGVSFHA NSFMELNLSR PLLRACETLG YKKPTPIQAA
201: CIPLALTGRD LCASAITGSG KTAAFALPTL ERLLFRPKRV FATRVLILTP TRELAVQIHS MIQKLAQFTD IKCGLIVGGL SVREQEVVLR SMPDIVVATP
301: GRMIDHLRNS MSVDLDDLAV LILDEADRLL QTGFATEIQE LVRLCPKRRQ TMLFSATMTE EVKELVKLSL NKPLRLSADP SARRPPGLTE EVVRIRRTRE
401: ANQEAVLLSL CTRTFKSKVI IFSGTKQAAH RLKILFGLAG LKAAELHGNL TQAQRLDSLE LFRKQEVDFL IATDVAARGL DIIGVQTVIN YACPREIDSY
501: VHRVGRTARA GREGYAVTFV TDNDRSLLKV IAKKVGSKLK SRIIPEQSIV KWSQIIDEME DQYSAVIRLE REERALRKAE MEFAKAENMI EHRDEIFARP
601: KRTWFMTEKE KKLVAKTEKD SAGNPSGNEL ISADIAEDLK MKEKRKRERE VRLSRSSSLF SCIIFFLDSH YLLPRELTIH LIMQAQKNLP RKKRRKLEAA
701: REMLEDNEEE DEEEEEGDDE KRGRSRGKDK KKKNEPEKKG LTLVDLGYRR AKAVKAKQRA IDSGKMDRPT PNKKQNLNRT KPKTQPRNEE MKDLFKSDMS
801: DKKQGRGGAA ASAKPRGKSK NSFKSKGRYN KFEFDPDNCQ YGNLLDDMID EVNEDNFDES DDQCSDDNLK DESE

Best Arabidopsis Sequence Match ( AT4G16630.1 )
(BLAST)

001: MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR

Arabidopsis Description

RH28DEAD-box ATP-dependent RNA helicase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRZ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.