CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53643	Canola	nucleus	96.31	95.73
Bra040743.1-P	Field mustard	nucleus	96.66	92.79
CDY40519	Canola	nucleus	81.29	89.97
AT4G16630.1	Thale cress	nucleus	82.84	88.09
CDY32273	Canola	nucleus	80.33	73.82
VIT_18s0001g14540.t01	Wine grape	nucleus	61.38	70.36
KRH37947	Soybean	plastid	49.11	69.95
KRH46113	Soybean	nucleus	62.1	68.82
KRH37970	Soybean	cytosol	26.1	68.44
KRG98832	Soybean	nucleus	61.86	68.38
Solyc04g081580.2.1	Tomato	nucleus	60.55	68.28
PGSC0003DMT400025551	Potato	nucleus	60.43	68.05
GSMUA_Achr8P12970_001	Banana	nucleus	57.45	62.92
Zm00001d021127_P001	Maize	nucleus, plasma membrane	55.3	60.26
Os12t0481100-01	Rice	nucleus	57.45	60.1
TraesCS5D01G385400.1	Wheat	nucleus	55.66	60.03
TraesCS5A01G375900.1	Wheat	nucleus	55.66	60.03
TraesCS5B01G378100.1	Wheat	nucleus	55.66	59.95
KXG35997	Sorghum	nucleus	56.14	59.32
Zm00001d006113_P001	Maize	nucleus	55.78	59.32
HORVU5Hr1G093160.3	Barley	nucleus	55.54	56.08
CDY42845	Canola	cytosol	17.16	32.07
CDY47007	Canola	cytosol	17.04	31.85
CDY52844	Canola	cytosol	18.24	31.42
CDX81759	Canola	cytosol	18.12	31.15
CDY40740	Canola	cytosol	16.33	25.32
CDY18530	Canola	nucleus	16.45	24.3
CDX95512	Canola	nucleus	16.45	24.21
CDY44780	Canola	mitochondrion	16.45	23.88
CDX96202	Canola	cytosol	7.87	23.74
CDX82336	Canola	nucleus	16.21	23.73
CDX92251	Canola	nucleus	16.09	23.73
CDX99342	Canola	nucleus	15.97	23.59
CDX70149	Canola	nucleus	16.81	23.58
CDY14112	Canola	cytosol	16.69	23.57
CDY04952	Canola	nucleus	16.69	23.57
CDX75974	Canola	nucleus	16.33	23.54
CDY36514	Canola	nucleus	16.09	23.16
CDY08740	Canola	nucleus	16.09	22.73
CDX79974	Canola	nucleus	17.52	21.37
CDY23886	Canola	plasma membrane	17.64	21.11
CDY41525	Canola	mitochondrion	17.88	21.1
CDY17287	Canola	nucleus	16.33	20.95
CDX84428	Canola	mitochondrion	17.4	20.65
CDY52719	Canola	nucleus, plastid	19.31	19.54
CDY34979	Canola	nucleus, plastid	19.19	19.35
CDX68066	Canola	cytosol	19.43	19.13
CDX79187	Canola	cytosol	19.31	19.1
CDY49890	Canola	mitochondrion	15.85	17.05
CDX69933	Canola	cytosol	2.74	16.91
CDY45370	Canola	mitochondrion	15.61	16.75
CDY21554	Canola	mitochondrion	18.24	11.26
CDX69935	Canola	mitochondrion	18.0	10.95

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078ILH5	UniProt:A0A078ILH5	EnsemblPlants:CDY50846	ProteinID:CDY50846
ProteinID:CDY50846.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00097588001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF541	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0004EDFE2E	SEG:seg

Description

BnaC08g47920DBnaC08g47920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILH5]

Coordinates

chrLK032944:+:34901..40600

Molecular Weight (calculated)

94951.2 Da

IEP (calculated)

4.997

GRAVY (calculated)

-0.751

Length

839 amino acids

Sequence
(BLAST)

001: MSGAFFYDAA SDDDLEFLNH EDESSDEDVA EERKARAEGG EDEEDSEVED EDDDDDDVEE EDEKPTRKGS TDAQSPWDFA SYSSSVGEEH ARRHTTSIDE
101: KISKAIKHRP LPISTEEEEE EEEEEEEEDV SEAEPDKQEE YLSEDEEAAD SKADNVAAKP FFSTVDGVSF HANSFMELNL SRPLLRACET LGYKKPTPIQ
201: AACIPLALTG RDLCASAITG SGKTAAFALP TLERLLFRPK RVFATRVLIL TPTRELAVQI HSMIQKLAQF TDIKCGLIVG GLSVREQEVV LRSMPDIVVA
301: TPGRMIDHLR NSMSVDLDDL AVLILDEADR LLQTGFATEI QELVRLCPKR RQTMLFSATM TEEVKELVKL SLNKPLRLSA DPSARRPPGL TEEVVRIRRT
401: REANQEAVLL SLCTRTFKSK VIIFSGTKQA AHRLKILFGL AGLKAAELHG NLTQAQRLDS LELFRKQEVD FLIATDVAAR GLDIIGVQTV INYACPREID
501: SYVHRVGRTA RAGREGYAVT FVTDNDRSLL KVIAKKVGSK LKSRIIPEQS IVKWSQIIDE MEDQYSAVIR LEREERALRK AEMEFAKAEN MIEHRDEIFA
601: RPKRTWFMTE KEKKLVAKTE KDSAGNPSGN ELVSADIAED LKMKEKRKRE REKNLPRKKR RKLEAAREML EDNEEEDEEE EEGEDEKRGR SRGNKKKKNE
701: PEKKGLTLVD LGYRRAKAVK AKQRAIDSGK MDRPTPNKKQ NLNRTKPKTQ PRNEEMKDLF KSDMSDKKQG SVGAGASAKP RGKSKNSFKS KGRYNKFEFD
801: PDNCQYGNLL DDMIDEVNED NFMKVMISVV MITLKDESE

Best Arabidopsis Sequence Match ( AT4G16630.1 )
(BLAST)

001: MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR

Arabidopsis Description

RH28DEAD-box ATP-dependent RNA helicase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRZ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.