CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46113	Soybean	nucleus	95.94	40.55
KRG98832	Soybean	nucleus	95.31	40.18
VIT_18s0001g14540.t01	Wine grape	nucleus	75.31	32.92
Solyc04g081580.2.1	Tomato	nucleus	75.0	32.26
PGSC0003DMT400025551	Potato	nucleus	74.69	32.08
KRH37947	Soybean	plastid	54.06	29.37
GSMUA_Achr8P12970_001	Banana	nucleus	70.0	29.24
Zm00001d021127_P001	Maize	nucleus, plasma membrane	70.0	29.09
KXG35997	Sorghum	nucleus	70.62	28.46
TraesCS5D01G385400.1	Wheat	nucleus	68.12	28.02
TraesCS5A01G375900.1	Wheat	nucleus	68.12	28.02
Zm00001d006113_P001	Maize	nucleus	69.06	28.01
TraesCS5B01G378100.1	Wheat	nucleus	68.12	27.98
CDY40519	Canola	nucleus	65.62	27.7
AT4G16630.1	Thale cress	nucleus	67.81	27.5
Os12t0481100-01	Rice	nucleus	68.44	27.31
HORVU5Hr1G093160.3	Barley	nucleus	68.12	26.23
CDY50846	Canola	nucleus	68.44	26.1
CDY53643	Canola	nucleus	68.12	25.83
Bra040743.1-P	Field mustard	nucleus	68.12	24.94
Bra038492.1-P	Field mustard	nucleus	56.56	19.93
CDY32273	Canola	nucleus	56.56	19.82
KRH65120	Soybean	cytosol	27.19	19.82
KRH59841	Soybean	nucleus	28.44	17.2
KRH37539	Soybean	nucleus	26.56	15.77
KRH62970	Soybean	nucleus	25.94	15.31
KRH54795	Soybean	nucleus	25.94	15.17
KRH12590	Soybean	nucleus	25.0	14.73
KRH56711	Soybean	nucleus	26.25	14.69
KRH03838	Soybean	nucleus	25.31	14.09
KRG97683	Soybean	nucleus	25.62	13.92
KRH43700	Soybean	cytosol	24.38	13.31
KRH13749	Soybean	cytosol, plastid	24.38	13.2
KRH41139	Soybean	nucleus	29.06	13.15
KRH47920	Soybean	nucleus	27.81	12.66
KRH31184	Soybean	nucleus	25.94	12.48
KRH48210	Soybean	nucleus	11.88	11.88
KRH06491	Soybean	nucleus	28.12	11.17
KRH48208	Soybean	nucleus	28.12	11.11
KRH65117	Soybean	plastid	27.81	10.8
KRH09570	Soybean	nucleus	25.94	10.68
KRH64859	Soybean	nucleus	25.62	10.55
KRH73730	Soybean	nucleus	24.06	10.32
KRH14417	Soybean	cytosol, nucleus	9.38	5.68
KRH54980	Soybean	nucleus	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02005575	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_09G101700	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:IPR014014	UniProt:K7LCY5	EnsemblPlants:KRH37970
ProteinID:KRH37970	ProteinID:KRH37970.1	InterPro:P-loop_NTPase	PFAM:PF00270	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF541	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SUPFAM:SSF52540	UniParc:UPI000296B8B1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:18461056..18469015

Molecular Weight (calculated)

35450.1 Da

IEP (calculated)

4.558

GRAVY (calculated)

-0.334

Length

320 amino acids

Sequence
(BLAST)

001: MSPSFVFDPP SVEEIEHEEH KEEEESVGEP QSESESEEHA RKSTTSVDEK ISKALKQRST PLVAELDHSF ESEPDEQEED EEEGNDGDSK SFFASSNGTS
101: FHVDSFLQFN LSRPLLRACE AFGYSKPTPI QAACIPLALS GRDICGSAIT GSGKTAAFAL PTLERLLFRP KRMRAIRVLI LTPTREVHSM IEKLAQFTDI
201: RCCLVVGGLS TKVQEAALRT MPDIVVATPG RMIDHLRNAM SVDLDDLAVL ILDEADRLLE LGFSAEIQEL VRLCPKKRQT MLFSATMTEE VDELIKLSLS
301: KPLRLSADPS TKRPATLTEN

Best Arabidopsis Sequence Match ( AT4G16630.1 )
(BLAST)

001: MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR

Arabidopsis Description

RH28DEAD-box ATP-dependent RNA helicase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRZ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.