CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59841	Soybean	nucleus	64.64	86.39
GSMUA_Achr3P14380_001	Banana	cytosol	46.68	73.83
VIT_02s0025g03950.t01	Wine grape	mitochondrion	67.61	63.4
VIT_06s0004g07260.t01	Wine grape	extracellular, vacuole	14.0	61.88
Bra027808.1-P	Field mustard	mitochondrion	65.35	59.15
CDY49890	Canola	mitochondrion	65.06	58.97
CDY45370	Canola	mitochondrion	65.21	58.95
PGSC0003DMT400010896	Potato	cytosol, nucleus, plastid	65.49	57.44
Solyc12g056340.1.1	Tomato	cytosol, nucleus, plastid	64.78	56.89
AT1G63250.1	Thale cress	mitochondrion	63.65	56.39
Os02t0826100-01	Rice	cytosol	61.1	53.27
AT2G07750.1	Thale cress	plastid	63.37	53.02
EES07789	Sorghum	mitochondrion	61.67	52.98
Zm00001d018516_P002	Maize	mitochondrion	60.96	52.69
TraesCS6B01G455000.1	Wheat	cytosol	60.25	50.53
TraesCS6D01G392700.1	Wheat	cytosol	60.11	50.48
HORVU6Hr1G093300.7	Barley	cytosol, nucleus	53.04	49.34
TraesCS6A01G409100.1	Wheat	cytosol	60.4	48.19
KRH47920	Soybean	nucleus	43.42	43.67
KRH06491	Soybean	nucleus	43.85	38.46
KRH37970	Soybean	cytosol	13.15	29.06
KRH65120	Soybean	cytosol	17.82	28.7
KRH62970	Soybean	nucleus	21.5	28.04
KRH54795	Soybean	nucleus	21.5	27.79
KRH56711	Soybean	nucleus	22.07	27.27
KRH03838	Soybean	nucleus	22.07	27.13
KRH48210	Soybean	nucleus	12.02	26.56
KRH37539	Soybean	nucleus	18.39	24.12
KRH12590	Soybean	nucleus	17.96	23.39
KRG97683	Soybean	nucleus	19.38	23.26
KRH31184	Soybean	nucleus	19.09	20.3
KRH43700	Soybean	cytosol	16.69	20.14
KRH13749	Soybean	cytosol, plastid	16.69	19.97
KRH37947	Soybean	plastid	16.55	19.86
KRH73730	Soybean	nucleus	20.51	19.44
KRH46113	Soybean	nucleus	20.79	19.42
KRG98832	Soybean	nucleus	20.79	19.37
KRH54980	Soybean	nucleus	4.67	18.54
KRH48208	Soybean	nucleus	18.95	16.54
KRH14417	Soybean	cytosol, nucleus	12.31	16.48
KRH65117	Soybean	plastid	18.25	15.66
KRH64859	Soybean	nucleus	16.83	15.32
KRH09570	Soybean	nucleus	16.69	15.19

Protein Annotations

EntrezGene:100808520	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02004750	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_08G012400	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1KP78	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRH41139	ProteinID:KRH41139	ProteinID:KRH41139.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF324	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00023382AA
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:972087..976305

Molecular Weight (calculated)

80382.2 Da

IEP (calculated)

9.912

GRAVY (calculated)

-0.481

Length

707 amino acids

Sequence
(BLAST)

001: MWGWMVGEAG RAACNWNWVS LRNMGGGPRT FPGGVNKWKW KRMHEKLARD KQNRLIEQEK QLYQARIRSH IRSTLSPDHQ SAAAATHRPL SPNDHVKALA
101: DRFVKEGAED LWNNHDGPLT PNPTPNLNFG PKHTRGYRSV PEVGNSRVGA HKYRFWRKGS DDSSSSESES EVELSVKKRG SSASLGEYDV KRERRVVPKT
201: SPEVEFIRYQ LNKRKLSQIE EQQSQEQQQS NESILSNTRF DECGISPLTV KALSSAGYVQ MTRIQEASLP ICLEGMDALV KAKTGTGKSV AFLLPAIETV
301: LKAMSSNTSQ RVPPIYVLIL CPTRELASQI AAVAKVLLKY HETIGVQTLV GGIRFKVDQK RLESDPCQIL VATPGRLLDH IENKSGISLR LMGLRMLVLD
401: EADHLLDLGF RKDVEKIVDC LPRQRQSLLF SATMPKEVRR VSQLVLKREH KYVDTVGMGC VETPVKVKQS YLIAPHESHF QLVHQILKEH ILQTPDYKVI
501: VFCVTGMVTS LMYNLLREMK MNVREIHSRK PQLYRTRISD EFRESKQLIL VSSDVSSRGM NYPDVTLVIQ VGIPSDREQY IHRLGRTGRE DKEGEGVLLI
601: APWEEYFLDE IKDLPLQNFP LPDINPHTKL KIENSMAKID NDIKEAAYHA WLGYYNSIRE IGREKTTMAE LANRFSESIG LQRPPALFRK TAIKMGLKDI
701: PGIRIRK

Best Arabidopsis Sequence Match ( AT1G63250.1 )
(BLAST)

001: MYSLILRERS GSITGSLWNR ISSRNMGGGP RTFPGGLNKW QWKRMHEKKA REKENKLLDQ EKQLYEARIR TEIRAKMWGN PDSGEKTAKS KQSHGPMSPK
101: EHIKTLADRF MKAGAEDFWN ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF KRNESSCDEG DDFDAKKLDT
201: LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV
301: REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV
401: NKVAPIFALI LCPTRELASQ IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS RLMALKLFIV DEADLLLDLG
501: FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT
601: SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD
701: ELKDLPLEPI PAPDLDSIVK HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR RTAVKMGLKG ISGIPIRK

Arabidopsis Description

RH48Probable DEAD-box ATP-dependent RNA helicase 48 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8S9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.