Factsheet for VIT_02s0025g03950.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g07260.t01	Wine grape	extracellular, vacuole	16.71	78.75
GSMUA_Achr3P14380_001	Banana	cytosol	45.23	76.29
KRH41139	Soybean	nucleus	63.4	67.61
Solyc12g056340.1.1	Tomato	cytosol, nucleus, plastid	67.64	63.35
PGSC0003DMT400010896	Potato	cytosol, nucleus, plastid	67.51	63.15
CDY49890	Canola	mitochondrion	63.4	61.28
Bra027808.1-P	Field mustard	mitochondrion	63.26	61.08
CDY45370	Canola	mitochondrion	63.0	60.74
AT1G63250.1	Thale cress	mitochondrion	62.6	59.15
KRH59841	Soybean	nucleus	40.19	57.28
Os02t0826100-01	Rice	cytosol	61.14	56.84
Zm00001d018516_P002	Maize	mitochondrion	60.21	55.5
AT2G07750.1	Thale cress	plastid	62.07	55.38
EES07789	Sorghum	mitochondrion	60.34	55.29
TraesCS6D01G392700.1	Wheat	cytosol	60.34	54.04
TraesCS6B01G455000.1	Wheat	cytosol	60.08	53.74
HORVU6Hr1G093300.7	Barley	cytosol, nucleus	52.65	52.24
TraesCS6A01G409100.1	Wheat	cytosol	60.34	51.35
VIT_15s0046g01010.t01	Wine grape	plastid	43.63	42.78
VIT_17s0000g04310.t01	Wine grape	cytosol	19.89	27.27
VIT_01s0010g01890.t01	Wine grape	nucleus	14.59	26.76
VIT_19s0085g00510.t01	Wine grape	cytosol	15.65	24.13
VIT_11s0065g01090.t01	Wine grape	cytosol	16.71	23.38
VIT_11s0016g00630.t01	Wine grape	nucleus	18.04	22.67
VIT_13s0067g01900.t01	Wine grape	nucleus	17.64	22.35
VIT_18s0001g14540.t01	Wine grape	nucleus	19.5	20.08
KRH54980	Soybean	nucleus	4.11	17.42
VIT_05s0049g02360.t01	Wine grape	nucleus	17.11	16.37

Protein Annotations

EntrezGene:100254793	wikigene:100254793	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CBI34707	ProteinID:CBI34707.3
ncoils:Coil	UniProt:D7TW32	InterPro:DEAD/DEAH_box_helicase_dom	EMBL:FN596251	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EntrezGene:LOC100254793	wikigene:LOC100254793
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF324	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI00015CD58A	ArrayExpress:VIT_02s0025g03950	EnsemblPlantsGene:VIT_02s0025g03950	EnsemblPlants:VIT_02s0025g03950.t01	RefSeq:XP_002276972	RefSeq:XP_002276972.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:3470403..3475501

Molecular Weight (calculated)

85349.5 Da

IEP (calculated)

9.963

GRAVY (calculated)

-0.442

Length

754 amino acids

Sequence
(BLAST)

001: MYSSILRRHS SSSSKLLCTF FFARPMGGGP RTFPGGINKW QWKRLHEKKA REKEKRLLDH EKQLYEARIR SQIRAKLAGK PVSEFSPDSD HPNHNPMSPQ
101: DHIKALADRF MKEGAEDLWN DDDGPVKSPP LLPRRPSNGL SRQIEPPVDL RKLTSHGRSL GPGNARIVSR ALKPRHYSVQ VRRRFRRNES SSSDDGSDVS
201: SGDEFSGRLV DDDVELRGRR NVQKMMSSAA LGKYDVKIKR RVMPKSIDEG DDFSEQIELI RHELSRKNLA EEEEKGDEES ILSQKRFDEC GVSPLTVKAL
301: SSAGYVQMTR VQEATLDVCL EGKDALVKAK TGTGKSAAFL LPAIEAVLKA TSSNRIQRVP PILVLILCPT REIASQIAAE ANVMLKYHDG IGVQTLIGGT
401: RFKFDQKRLE SDPCQIIVAT PGRLLDHIEN KGSFSVRLMG LKMLVLDEAD HLLDLGFRKD MEKIVDCLPR QRQSLLFSAT VPKEVRRISQ LVLKKEHAFV
501: DTVGLGNAET HAKVRQSYLV APHKLHFQIV YHLLKDHILQ VPDYKVIVFC TTAMVTSLVF LLLQEMKVNV REIHSRKPQI YRTRISEEFR ESKRLVLITS
601: DVSARGINYP DVTLVIQMGI PSDREQYIHR LGRTGREGKE GEGILLVAPW EEYFLDEIKD LPIEKFPLPL LDPDLKLKVG ASMDKIDTSV KEAAYHAWLG
701: YYNSIRETGR DKTTLVELAN QFCESIGLQK PPLLFRKTAL KMGLKGIPGI RIRR

Best Arabidopsis Sequence Match ( AT1G63250.1 )
(BLAST)

001: MYSLILRERS GSITGSLWNR ISSRNMGGGP RTFPGGLNKW QWKRMHEKKA REKENKLLDQ EKQLYEARIR TEIRAKMWGN PDSGEKTAKS KQSHGPMSPK
101: EHIKTLADRF MKAGAEDFWN ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF KRNESSCDEG DDFDAKKLDT
201: LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV
301: REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV
401: NKVAPIFALI LCPTRELASQ IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS RLMALKLFIV DEADLLLDLG
501: FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT
601: SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD
701: ELKDLPLEPI PAPDLDSIVK HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR RTAVKMGLKG ISGIPIRK

Arabidopsis Description

RH48Probable DEAD-box ATP-dependent RNA helicase 48 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8S9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.