Factsheet for VIT_06s0004g07260.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

plastid 1
mitochondrion 1
extracellular 4
nucleus 1
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P14380_001	Banana	cytosol	56.88	20.36
VIT_02s0025g03950.t01	Wine grape	mitochondrion	78.75	16.71
KRH41139	Soybean	nucleus	61.88	14.0
KRH54980	Soybean	nucleus	14.38	12.92
Bra027808.1-P	Field mustard	mitochondrion	60.62	12.42
CDY45370	Canola	mitochondrion	60.62	12.4
HORVU6Hr1G093300.7	Barley	cytosol, nucleus	58.75	12.37
CDY49890	Canola	mitochondrion	60.0	12.31
VIT_15s0046g01010.t01	Wine grape	plastid	58.75	12.22
Solyc12g056340.1.1	Tomato	cytosol, nucleus, plastid	61.25	12.17
PGSC0003DMT400010896	Potato	cytosol, nucleus, plastid	60.62	12.03
AT1G63250.1	Thale cress	mitochondrion	59.38	11.9
Os02t0826100-01	Rice	cytosol	57.5	11.34
Zm00001d018516_P002	Maize	mitochondrion	57.5	11.25
EES07789	Sorghum	mitochondrion	57.5	11.18
TraesCS6D01G392700.1	Wheat	cytosol	58.12	11.05
TraesCS6B01G455000.1	Wheat	cytosol	58.12	11.03
AT2G07750.1	Thale cress	plastid	58.12	11.01
TraesCS6A01G409100.1	Wheat	cytosol	58.12	10.5
VIT_01s0010g01890.t01	Wine grape	nucleus	24.38	9.49
VIT_11s0065g01090.t01	Wine grape	cytosol	25.0	7.42
VIT_19s0085g00510.t01	Wine grape	cytosol	21.88	7.16
VIT_17s0000g04310.t01	Wine grape	cytosol	23.75	6.91
VIT_13s0067g01900.t01	Wine grape	nucleus	21.88	5.88
VIT_11s0016g00630.t01	Wine grape	nucleus	21.88	5.83
VIT_18s0001g14540.t01	Wine grape	nucleus	22.5	4.92
VIT_05s0049g02360.t01	Wine grape	nucleus	21.88	4.44
KRH59841	Soybean	nucleus	1.88	0.57

Protein Annotations

ArrayExpress:VIT_06s0004g07260	EMBL:FN594951	EnsemblPlants:VIT_06s0004g07260.t01	EnsemblPlantsGene:VIT_06s0004g07260	Gene3D:3.40.50.300	InterPro:Helicase_C
InterPro:IPR001650	InterPro:P-loop_NTPase	PANTHER:PTHR24031	PANTHER:PTHR24031:SF324	PFAM:PF00271	PFscan:PS51194
ProteinID:CBI15887	ProteinID:CBI15887.3	SEG:seg	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0001BE112F
UniProt:D7SJR1	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr6:+:8005880..8006625

Molecular Weight (calculated)

18875.1 Da

IEP (calculated)

7.164

GRAVY (calculated)

-0.304

Length

160 amino acids

Sequence
(BLAST)

001: MVTSLVFLLL QEMKLNLWEI HSRKPQIYQT RISEEFRESK RLVLITSDVS AHGINYPDVT LVIQMGIPSD QEKYIHHLGR TGREGKEGED ILLVAPWEEY
101: FLDEIKDLPI EKFPLPLLDP DLKLKVGCHL SEGSWLGFFW LRDMAHWRPK WKRLNLPKIK

Best Arabidopsis Sequence Match ( AT1G63250.1 )
(BLAST)

001: MYSLILRERS GSITGSLWNR ISSRNMGGGP RTFPGGLNKW QWKRMHEKKA REKENKLLDQ EKQLYEARIR TEIRAKMWGN PDSGEKTAKS KQSHGPMSPK
101: EHIKTLADRF MKAGAEDFWN ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF KRNESSCDEG DDFDAKKLDT
201: LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV
301: REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV
401: NKVAPIFALI LCPTRELASQ IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS RLMALKLFIV DEADLLLDLG
501: FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT
601: SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD
701: ELKDLPLEPI PAPDLDSIVK HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR RTAVKMGLKG ISGIPIRK

Arabidopsis Description

RH48Probable DEAD-box ATP-dependent RNA helicase 48 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8S9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.