CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027808.1-P	Field mustard	mitochondrion	97.82	97.7
CDY45370	Canola	mitochondrion	97.44	97.19
AT1G63250.1	Thale cress	mitochondrion	87.31	85.34
AT2G07750.1	Thale cress	plastid	85.77	79.17
GSMUA_Achr3P14380_001	Banana	cytosol	40.9	71.36
KRH41139	Soybean	nucleus	58.97	65.06
VIT_02s0025g03950.t01	Wine grape	mitochondrion	61.28	63.4
VIT_06s0004g07260.t01	Wine grape	extracellular, vacuole	12.31	60.0
Solyc12g056340.1.1	Tomato	cytosol, nucleus, plastid	58.08	56.27
PGSC0003DMT400010896	Potato	cytosol, nucleus, plastid	58.08	56.2
KRH59841	Soybean	nucleus	37.44	55.2
EES07789	Sorghum	mitochondrion	55.38	52.49
Os02t0826100-01	Rice	cytosol	54.36	52.28
Zm00001d018516_P002	Maize	mitochondrion	53.97	51.47
TraesCS6D01G392700.1	Wheat	cytosol	53.08	49.17
TraesCS6B01G455000.1	Wheat	cytosol	52.82	48.87
CDY40740	Canola	cytosol	33.33	48.06
HORVU6Hr1G093300.7	Barley	cytosol, nucleus	46.54	47.76
TraesCS6A01G409100.1	Wheat	cytosol	52.95	46.61
CDY44780	Canola	mitochondrion	33.72	45.5
CDX84428	Canola	mitochondrion	37.44	41.3
CDX69933	Canola	cytosol	7.18	41.18
CDY41525	Canola	mitochondrion	37.31	40.93
CDY47007	Canola	cytosol	15.13	26.28
CDY42845	Canola	cytosol	15.13	26.28
CDY36514	Canola	nucleus	19.62	26.24
CDY08740	Canola	nucleus	19.49	25.59
CDX99342	Canola	nucleus	18.59	25.53
CDX95512	Canola	nucleus	18.59	25.44
CDY18530	Canola	nucleus	18.46	25.35
CDX92251	Canola	nucleus	18.46	25.31
CDX81759	Canola	cytosol	15.64	25.0
CDX82336	Canola	nucleus	18.33	24.96
CDY52844	Canola	cytosol	15.51	24.85
CDX75974	Canola	nucleus	18.33	24.57
CDX96202	Canola	cytosol	8.46	23.74
CDY21554	Canola	mitochondrion	38.33	22.0
CDX69935	Canola	mitochondrion	38.59	21.83
CDY04952	Canola	nucleus	16.15	21.21
CDY14112	Canola	cytosol	16.15	21.21
CDX70149	Canola	nucleus	15.77	20.57
CDY17287	Canola	nucleus	16.41	19.57
KRH54980	Soybean	nucleus	4.23	18.54
CDX79974	Canola	nucleus	16.28	18.46
CDY23886	Canola	plasma membrane	16.28	18.12
CDY40519	Canola	nucleus	16.92	17.41
CDY52719	Canola	nucleus, plastid	18.21	17.13
CDY34979	Canola	nucleus, plastid	17.95	16.83
CDY53643	Canola	nucleus	17.18	15.88
CDY50846	Canola	nucleus	17.05	15.85
CDX68066	Canola	cytosol	14.74	13.5
CDX79187	Canola	cytosol	14.62	13.44
CDY32273	Canola	nucleus	15.64	13.36

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078IG56	UniProt:A0A078IG56	EnsemblPlants:CDY49890	ProteinID:CDY49890
ProteinID:CDY49890.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00094039001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF324	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0004EEF108	SEG:seg	:	:

Description

BnaC09g51300DBnaC09g51300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IG56]

Coordinates

chrLK032866:-:76000..79107

Molecular Weight (calculated)

87813.7 Da

IEP (calculated)

10.037

GRAVY (calculated)

-0.552

Length

780 amino acids

Sequence
(BLAST)

001: MYSTMLRERS GSIWSLILSR NMGGGPRTFP GGLNKWQWKR MHEKKAREKE NKLLDQEKQL YEARIRSEIR AKMLGGNHDS NENTAKSNQS HGPLSPQEHI
101: KSLADRFMKA GAEDLWNEDD GPVKKTNQGS RLNRVGNGGS RSNSPIDVRS LVGRRGFSSM SHRGRFKRNE SSCDEGEDFD SKKFDTLSPF SPGFAGKKEK
201: VKSVSNVMRN KGLFGRRKFR KNDSSTEEDS EEEDGKMNGW MDVRRTGSSA SLGNHDFKLI KRVQRNVTDE DLYPPLDING VRDDLSKRKS VENVMEVNGE
301: PRDSIYSGRR FDESSVSPLT LKALSASGIV KMTRVQDATL SECFEAGQDA LVKAKTGTGK SMAFLLPAIE TVLKAMASSN GVHRVPPILV LILCPTRELA
401: SQIAAEGKAL LKYHDGIGVQ TLIGGTRFKL DQQRLQSDPC QILIATPGRL LDHIENKSNI TSRLMALKLF VVDEADLLLD LGFRRDVEKI IDCLPRQRQS
501: LLFSATIPKE VRRVSQLVLK RDHSYIDTIG LGCVETHDKV KQSCLVAPHE SHFHLVPHLL KEHINNTADY KIIVFCSTGM VTSLMYTLLR EMKLNVREIH
601: ARKPQLHRTR VSDEFKESKR LILVTSDVSA RGMNYPDVTL VIQVGIPSDR EQYIHRLGRT GREGKGGKGL LLIAPWERYF LDELKDLPIE PIQVPDLDSR
701: FKLEVDQSMG KIDTSIKEAA YHAWLGYYNS VRETGRDKTT LAELANRFCY SIGLEKPPPL FRKTAVKMGL KGISGIPIRK

Best Arabidopsis Sequence Match ( AT1G63250.1 )
(BLAST)

001: MYSLILRERS GSITGSLWNR ISSRNMGGGP RTFPGGLNKW QWKRMHEKKA REKENKLLDQ EKQLYEARIR TEIRAKMWGN PDSGEKTAKS KQSHGPMSPK
101: EHIKTLADRF MKAGAEDFWN ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF KRNESSCDEG DDFDAKKLDT
201: LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV
301: REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV
401: NKVAPIFALI LCPTRELASQ IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS RLMALKLFIV DEADLLLDLG
501: FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT
601: SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD
701: ELKDLPLEPI PAPDLDSIVK HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR RTAVKMGLKG ISGIPIRK

Arabidopsis Description

RH48Probable DEAD-box ATP-dependent RNA helicase 48 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8S9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.