Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G71280.1 | Thale cress | nucleus | 60.07 | 35.91 |
| CDX70149 | Canola | nucleus | 73.02 | 33.95 |
| CDY04952 | Canola | nucleus | 71.94 | 33.67 |
| CDY14112 | Canola | cytosol | 71.58 | 33.5 |
| AT1G71370.1 | Thale cress | nucleus | 64.39 | 32.08 |
| VIT_13s0067g01900.t01 | Wine grape | nucleus | 62.95 | 29.41 |
| KRG97683 | Soybean | nucleus | 62.23 | 29.37 |
| Solyc02g078880.2.1 | Tomato | nucleus | 61.51 | 28.79 |
| PGSC0003DMT400057606 | Potato | nucleus | 61.15 | 27.29 |
| KRH31184 | Soybean | nucleus | 60.43 | 25.26 |
| GSMUA_Achr8P01870_001 | Banana | cytosol | 56.83 | 24.27 |
| CDY47007 | Canola | cytosol | 23.74 | 14.7 |
| CDY42845 | Canola | cytosol | 23.38 | 14.48 |
| CDX99342 | Canola | nucleus | 29.14 | 14.26 |
| CDX92251 | Canola | nucleus | 28.78 | 14.06 |
| CDX82336 | Canola | nucleus | 28.78 | 13.96 |
| CDX95512 | Canola | nucleus | 28.42 | 13.86 |
| CDX75974 | Canola | nucleus | 28.78 | 13.75 |
| CDY18530 | Canola | nucleus | 28.06 | 13.73 |
| CDY40740 | Canola | cytosol | 25.18 | 12.94 |
| CDY36514 | Canola | nucleus | 26.98 | 12.86 |
| CDY08740 | Canola | nucleus | 26.98 | 12.63 |
| CDY52844 | Canola | cytosol | 21.58 | 12.32 |
| CDX81759 | Canola | cytosol | 21.22 | 12.09 |
| CDY44780 | Canola | mitochondrion | 24.82 | 11.94 |
| CDY17287 | Canola | nucleus | 24.46 | 10.4 |
| CDY41525 | Canola | mitochondrion | 25.9 | 10.13 |
| CDX84428 | Canola | mitochondrion | 25.18 | 9.9 |
| CDY40519 | Canola | nucleus | 24.46 | 8.97 |
| CDX79974 | Canola | nucleus | 21.94 | 8.87 |
| CDY23886 | Canola | plasma membrane | 22.3 | 8.84 |
| CDY45370 | Canola | mitochondrion | 24.1 | 8.57 |
| CDY49890 | Canola | mitochondrion | 23.74 | 8.46 |
| CDX79187 | Canola | cytosol | 24.46 | 8.02 |
| CDX68066 | Canola | cytosol | 24.46 | 7.98 |
| CDY50846 | Canola | nucleus | 23.74 | 7.87 |
| CDY53643 | Canola | nucleus | 23.74 | 7.82 |
| CDY52719 | Canola | nucleus, plastid | 20.14 | 6.76 |
| CDY34979 | Canola | nucleus, plastid | 20.14 | 6.73 |
| CDY32273 | Canola | nucleus | 21.22 | 6.46 |
| CDY21554 | Canola | mitochondrion | 25.18 | 5.15 |
| CDX69935 | Canola | mitochondrion | 24.82 | 5.0 |
| CDX69933 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078E4Z5 | EnsemblPlants:CDX96202 | ProteinID:CDX96202 | ProteinID:CDX96202.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00102290001 | InterPro:Helicase_ATP-bd | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | ScanProsite:PS00039 |
| PFscan:PS51192 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF2 | InterPro:RNA-helicase_DEAD-box_CS | SMART:SM00487 | SUPFAM:SSF52540 |
| TMHMM:TMhelix | UniParc:UPI0004EE49CD | SEG:seg | : | : | : |
Description
BnaC02g14490D
Coordinates
chrLK031893:+:599919..601143
Molecular Weight (calculated)
31172.4 Da
IEP (calculated)
9.018
GRAVY (calculated)
0.069
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTKRALTGT RFADLKPPIS DDIIKALGSG FEFCTPVQVA TIPLLCSYKD VAVDAATGSG KTLAFVVSLV EIMRRSTSYT PKPHQVMGVI ISPTRELSAQ
101: IFKVTQPFVS TLPNVNAVLL VGGRKVKADM KTIEEGGGNL LIGTPGRLSD IMQRMDILDF RHVEILILDE ADRLLDMGFQ KQMNYNISRL PNNSPTRKRL
201: LVCILSIWYA KQITNHHKLV DLQIENKNKK AYCHVYLCRY FITCASVIYW GFVLSKIPIL KSISLIPIHN TWEDEAEC
101: IFKVTQPFVS TLPNVNAVLL VGGRKVKADM KTIEEGGGNL LIGTPGRLSD IMQRMDILDF RHVEILILDE ADRLLDMGFQ KQMNYNISRL PNNSPTRKRL
201: LVCILSIWYA KQITNHHKLV DLQIENKNKK AYCHVYLCRY FITCASVIYW GFVLSKIPIL KSISLIPIHN TWEDEAEC
001: MDSSANINKA LTETRFSDLE PPLSGDIIEA LNQSDFEFCT PVQAATIPLL CSYKDVAVDA ATGSGKTLAF VVPLVEILRR STSFPPKPHQ VMGVIISPTR
101: ELSTQIYNVA QPFVSTLANV NSVLLVGGRE VKADMKIIEE EGCNVLIGTP GRLSDIMERM EILDFRNLEI LILDEADRLL EMGFQRQVNY IISRLPKQRR
201: TGLFSATQTE GVEELAKAGL RNPVRVEVRA KSKSESSQQL TNSKTPSGLH LEYMECEADK KSSQLVDLLI KNSDKKLIVF FMTCASVDYW GLVLSKIPAL
301: KSISLIPIHG DMKQNARDKA LASFTKASSG ALLCTDVAAR GLDIPGIDYV VQYDPPQDPN MFNHRAGRTA RLGRQGRAIV FLLPKEEAYV EFMRIRRVPL
401: EERKCSEDAS DVIPIIRSAA MKDRAVMEKG LKAFVSFVRA YKEHHCSFIF RWKDLEIGKL AMGYGLLYLP SMSEVKQHRL SSEGFTPVEG VKFEEIKFKD
501: KYREKQRQQN LQVRKEKRQE EKKEKGKRKR VDASASNDPK KASRKLTGKQ RQTIQTAEDE EVMDRDYKLM IKVKKGLIKE DEYERLTGDD DLF
101: ELSTQIYNVA QPFVSTLANV NSVLLVGGRE VKADMKIIEE EGCNVLIGTP GRLSDIMERM EILDFRNLEI LILDEADRLL EMGFQRQVNY IISRLPKQRR
201: TGLFSATQTE GVEELAKAGL RNPVRVEVRA KSKSESSQQL TNSKTPSGLH LEYMECEADK KSSQLVDLLI KNSDKKLIVF FMTCASVDYW GLVLSKIPAL
301: KSISLIPIHG DMKQNARDKA LASFTKASSG ALLCTDVAAR GLDIPGIDYV VQYDPPQDPN MFNHRAGRTA RLGRQGRAIV FLLPKEEAYV EFMRIRRVPL
401: EERKCSEDAS DVIPIIRSAA MKDRAVMEKG LKAFVSFVRA YKEHHCSFIF RWKDLEIGKL AMGYGLLYLP SMSEVKQHRL SSEGFTPVEG VKFEEIKFKD
501: KYREKQRQQN LQVRKEKRQE EKKEKGKRKR VDASASNDPK KASRKLTGKQ RQTIQTAEDE EVMDRDYKLM IKVKKGLIKE DEYERLTGDD DLF
Arabidopsis Description
RH18DEAD-box ATP-dependent RNA helicase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.