Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024428.1-P | Field mustard | nucleus | 99.49 | 100.0 |
| CDY36514 | Canola | nucleus | 95.96 | 97.77 |
| AT5G65900.1 | Thale cress | nucleus | 80.98 | 75.99 |
| GSMUA_Achr10P... | Banana | cytosol | 54.55 | 62.67 |
| VIT_17s0000g04310.t01 | Wine grape | cytosol | 57.74 | 62.36 |
| PGSC0003DMT400063252 | Potato | nucleus | 58.75 | 61.66 |
| KRH62970 | Soybean | nucleus | 56.06 | 61.44 |
| CDY18530 | Canola | nucleus | 58.25 | 60.92 |
| CDX92251 | Canola | nucleus | 58.08 | 60.63 |
| CDX95512 | Canola | nucleus | 58.08 | 60.53 |
| CDX82336 | Canola | nucleus | 58.25 | 60.38 |
| Solyc03g114370.2.1 | Tomato | nucleus | 57.41 | 60.25 |
| CDX99342 | Canola | nucleus | 57.58 | 60.21 |
| KRH56711 | Soybean | nucleus | 57.91 | 60.14 |
| KRH03838 | Soybean | nucleus | 58.08 | 60.0 |
| KRH54795 | Soybean | nucleus | 55.22 | 59.96 |
| CDX75974 | Canola | nucleus | 58.25 | 59.45 |
| HORVU4Hr1G000640.1 | Barley | cytosol, nucleus | 46.13 | 55.13 |
| GSMUA_Achr7P07500_001 | Banana | cytosol, nucleus, peroxisome | 51.52 | 54.84 |
| TraesCS6D01G292400.1 | Wheat | nucleus | 50.17 | 53.89 |
| TraesCS6A01G312900.1 | Wheat | nucleus | 49.66 | 53.35 |
| TraesCS5A01G114200.1 | Wheat | nucleus | 51.85 | 53.1 |
| TraesCS5B01G120400.1 | Wheat | nucleus | 51.52 | 52.76 |
| TraesCS5D01G127000.1 | Wheat | nucleus | 51.52 | 52.76 |
| TraesCS6B01G342900.1 | Wheat | nucleus | 48.48 | 52.75 |
| Os03t0802700-01 | Rice | nucleus | 52.02 | 52.37 |
| TraesCS5A01G042300.1 | Wheat | nucleus | 49.83 | 51.39 |
| EER90714 | Sorghum | nucleus | 53.54 | 51.04 |
| TraesCS6A01G356000.1 | Wheat | nucleus | 48.65 | 50.44 |
| Os06t0535100-00 | Rice | nucleus | 48.99 | 50.0 |
| Zm00001d000431_P001 | Maize | plastid | 40.57 | 49.59 |
| TraesCS5D01G050600.1 | Wheat | nucleus | 46.63 | 49.55 |
| KXG37786 | Sorghum | nucleus | 37.21 | 48.79 |
| OQU76528 | Sorghum | nucleus | 48.82 | 48.41 |
| Zm00001d023501_P001 | Maize | nucleus | 48.65 | 47.93 |
| HORVU5Hr1G010160.3 | Barley | cytosol | 48.48 | 47.84 |
| Zm00001d013056_P001 | Maize | nucleus | 51.85 | 46.95 |
| TraesCS7B01G213800.1 | Wheat | nucleus | 23.91 | 45.95 |
| TraesCS7D01G309800.1 | Wheat | nucleus | 23.57 | 44.87 |
| TraesCS7A01G313300.1 | Wheat | nucleus | 23.23 | 44.66 |
| CDY42845 | Canola | cytosol | 24.92 | 32.96 |
| CDY47007 | Canola | cytosol | 24.75 | 32.74 |
| CDY17287 | Canola | nucleus | 32.32 | 29.36 |
| CDY52844 | Canola | cytosol | 23.74 | 28.95 |
| CDX81759 | Canola | cytosol | 23.74 | 28.89 |
| CDY40740 | Canola | cytosol | 25.08 | 27.54 |
| CDX96202 | Canola | cytosol | 12.63 | 26.98 |
| CDX79974 | Canola | nucleus | 31.14 | 26.89 |
| CDY23886 | Canola | plasma membrane | 31.14 | 26.39 |
| CDY14112 | Canola | cytosol | 25.93 | 25.93 |
| CDY04952 | Canola | nucleus | 25.93 | 25.93 |
| CDY44780 | Canola | mitochondrion | 24.92 | 25.61 |
| CDX70149 | Canola | nucleus | 25.42 | 25.25 |
| CDX84428 | Canola | mitochondrion | 25.93 | 21.78 |
| CDY41525 | Canola | mitochondrion | 25.93 | 21.66 |
| CDY45370 | Canola | mitochondrion | 26.09 | 19.82 |
| CDY49890 | Canola | mitochondrion | 25.59 | 19.49 |
| CDY40519 | Canola | nucleus | 23.06 | 18.07 |
| CDX69933 | Canola | cytosol | 4.04 | 17.65 |
| CDY52719 | Canola | nucleus, plastid | 23.06 | 16.53 |
| CDY34979 | Canola | nucleus, plastid | 22.9 | 16.35 |
| CDX79187 | Canola | cytosol | 23.23 | 16.27 |
| CDX68066 | Canola | cytosol | 23.23 | 16.2 |
| CDY50846 | Canola | nucleus | 22.73 | 16.09 |
| CDY53643 | Canola | nucleus | 22.56 | 15.88 |
| CDY32273 | Canola | nucleus | 21.21 | 13.8 |
| CDY21554 | Canola | mitochondrion | 25.59 | 11.18 |
| CDX69935 | Canola | mitochondrion | 25.76 | 11.1 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078F2K6 | UniProt:A0A078F2K6 | EnsemblPlants:CDY08740 | ProteinID:CDY08740 |
| ProteinID:CDY08740.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF4217 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00000667001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF13959 | ScanProsite:PS00039 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF305 | InterPro:RNA-helicase_DEAD-box_CS |
| InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SMART:SM01178 | SUPFAM:SSF52540 | UniParc:UPI0004EDC1E0 |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g24840DRNA helicase [Source:UniProtKB/TrEMBL;Acc:A0A078F2K6]
Coordinates
chrLK031989:-:81429..84320
Molecular Weight (calculated)
67315.6 Da
IEP (calculated)
9.842
GRAVY (calculated)
-0.561
Length
594 amino acids
Sequence
(BLAST)
(BLAST)
001: MANLDMEQHS PEKEEMKTKT KTKKKRSRDK DKAKILKQLA KTEVKEPKAI TDEEPKKKKK KKLKQVAMED EETKAINDEE PKKKKKKKAK QLEEEEEEDK
101: VEESGGNGIM TNETFESLGL SDNTHKSIKE MGFARMTQIQ AKAIPPLMMG KDVLGAARTG SGKTLAFLIP AVELLYHVRF TPRNGTGVIV ICPTRELAIQ
201: SYLVAKELLK FHSQTVGKVI GGEPRKKEVE ILVKGVNLLV ATPGRLLDHL ENTDGFVFKN LKFLVMDEAD RILEQNFEED MKKIIKLLPK TRQTSLFSAT
301: QTSKVEDLAR VSLTSPVYID VDEGRKEVTN EGLEQGYCVV PSAKRLLFLL TFLKTFHGKK KIMVFFSTCK STKFHTELFR YIKIDCLAIH GGMEQSKRTS
401: TFFQFVKLET GVLLCTNVGA RGLDFPHVDW IVQYDPPDDP TEYIHRVGRT ARGEGAKGKA LLVLTPTELQ FIQYLKAAKI PVEEHEFEEE KLLNVQAFLE
501: KTISENSALS VSAKEAYKTY ISGYDSHSMK DVFNAHRLDL KEVAASFCFS SPPKVLLKIH REGDGYRSKR EPVNNKFNRG RGGRPGGKTK FERY
101: VEESGGNGIM TNETFESLGL SDNTHKSIKE MGFARMTQIQ AKAIPPLMMG KDVLGAARTG SGKTLAFLIP AVELLYHVRF TPRNGTGVIV ICPTRELAIQ
201: SYLVAKELLK FHSQTVGKVI GGEPRKKEVE ILVKGVNLLV ATPGRLLDHL ENTDGFVFKN LKFLVMDEAD RILEQNFEED MKKIIKLLPK TRQTSLFSAT
301: QTSKVEDLAR VSLTSPVYID VDEGRKEVTN EGLEQGYCVV PSAKRLLFLL TFLKTFHGKK KIMVFFSTCK STKFHTELFR YIKIDCLAIH GGMEQSKRTS
401: TFFQFVKLET GVLLCTNVGA RGLDFPHVDW IVQYDPPDDP TEYIHRVGRT ARGEGAKGKA LLVLTPTELQ FIQYLKAAKI PVEEHEFEEE KLLNVQAFLE
501: KTISENSALS VSAKEAYKTY ISGYDSHSMK DVFNAHRLDL KEVAASFCFS SPPKVLLKIH REGDGYRSKR EPVNNKFNRG RGGRPGGKTK FERY
001: MANLDMEQHS SENEEIKKKK HKKRARDEAK KLKQPAMEEE PDHEDGDAKE NNALIDEEPK KKKKKKNKKR GDTDDGEDEA VAEEEPKKKK KKNKKLQQRG
101: DTNDEEDEVI AEEEEPKKKK KKQRKDTEAK SEEEEVEDKE EEKKLEETSI MTNKTFESLS LSDNTYKSIK EMGFARMTQI QAKAIPPLMM GEDVLGAART
201: GSGKTLAFLI PAVELLYRVK FTPRNGTGVL VICPTRELAI QSYGVAKELL KYHSQTVGKV IGGEKRKTEA EILAKGVNLL VATPGRLLDH LENTNGFIFK
301: NLKFLVMDEA DRILEQNFEE DLKKILNLLP KTRQTSLFSA TQSAKVEDLA RVSLTSPVYI DVDEGRKEVT NEGLEQGYCV VPSAMRLLFL LTFLKRFQGK
401: KKIMVFFSTC KSTKFHAELF RYIKFDCLEI RGGIDQNKRT PTFLQFIKAE TGILLCTNVA ARGLDFPHVD WIVQYDPPDN PTDYIHRVGR TARGEGAKGK
501: ALLVLTPQEL KFIQYLKAAK IPVEEHEFEE KKLLDVKPFV ENLISENYAL KESAKEAYKT YISGYDSHSM KDVFNVHQLN LTEVATSFGF SDPPKVALKI
601: DRGGYRSKRE PVNKFKRGRG GGRPGGKSKF ERY
101: DTNDEEDEVI AEEEEPKKKK KKQRKDTEAK SEEEEVEDKE EEKKLEETSI MTNKTFESLS LSDNTYKSIK EMGFARMTQI QAKAIPPLMM GEDVLGAART
201: GSGKTLAFLI PAVELLYRVK FTPRNGTGVL VICPTRELAI QSYGVAKELL KYHSQTVGKV IGGEKRKTEA EILAKGVNLL VATPGRLLDH LENTNGFIFK
301: NLKFLVMDEA DRILEQNFEE DLKKILNLLP KTRQTSLFSA TQSAKVEDLA RVSLTSPVYI DVDEGRKEVT NEGLEQGYCV VPSAMRLLFL LTFLKRFQGK
401: KKIMVFFSTC KSTKFHAELF RYIKFDCLEI RGGIDQNKRT PTFLQFIKAE TGILLCTNVA ARGLDFPHVD WIVQYDPPDN PTDYIHRVGR TARGEGAKGK
501: ALLVLTPQEL KFIQYLKAAK IPVEEHEFEE KKLLDVKPFV ENLISENYAL KESAKEAYKT YISGYDSHSM KDVFNVHQLN LTEVATSFGF SDPPKVALKI
601: DRGGYRSKRE PVNKFKRGRG GGRPGGKSKF ERY
Arabidopsis Description
RH27DEAD-box ATP-dependent RNA helicase 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB89]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.