Factsheet for Os06t0535100-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	62.2	72.84
TraesCS5A01G042300.1	Wheat	nucleus	69.24	69.97
TraesCS6D01G292400.1	Wheat	nucleus	65.64	69.08
Os03t0802700-01	Rice	nucleus	69.76	68.81
TraesCS6A01G312900.1	Wheat	nucleus	65.29	68.72
TraesCS5D01G050600.1	Wheat	nucleus	65.64	68.34
TraesCS6B01G342900.1	Wheat	nucleus	63.57	67.77
TraesCS6A01G356000.1	Wheat	nucleus	66.32	67.36
OQU76528	Sorghum	nucleus	68.9	66.94
HORVU5Hr1G010160.3	Barley	cytosol	68.38	66.11
GSMUA_Achr10P...	Banana	cytosol	58.59	65.96
Zm00001d023501_P001	Maize	nucleus	67.18	64.84
Zm00001d000431_P001	Maize	plastid	53.44	63.99
KXG37786	Sorghum	nucleus	48.97	62.91
VIT_17s0000g04310.t01	Wine grape	cytosol	57.9	61.27
PGSC0003DMT400063252	Potato	nucleus	56.36	57.95
KRH62970	Soybean	nucleus	53.95	57.93
Solyc03g114370.2.1	Tomato	nucleus	55.67	57.24
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	54.81	57.17
KRH56711	Soybean	nucleus	56.19	57.17
KRH03838	Soybean	nucleus	56.36	57.04
KRH54795	Soybean	nucleus	52.75	56.12
Bra022336.1-P	Field mustard	nucleus	51.89	53.17
CDX92251	Canola	nucleus	51.72	52.9
CDX99342	Canola	nucleus	51.37	52.64
Bra037574.1-P	Field mustard	nucleus	51.03	52.47
CDY18530	Canola	nucleus	51.03	52.29
CDX82336	Canola	nucleus	51.2	52.01
CDX95512	Canola	nucleus	50.86	51.93
CDX75974	Canola	nucleus	51.55	51.55
AT3G18600.1	Thale cress	nucleus	50.0	51.23
CDY36514	Canola	nucleus	49.66	49.57
Bra024428.1-P	Field mustard	nucleus	50.0	49.24
Bra001713.1-P	Field mustard	nucleus	51.2	49.17
CDY08740	Canola	nucleus	50.0	48.99
AT5G65900.1	Thale cress	nucleus	49.31	45.34
Os07t0660000-00	Rice	cytosol	23.37	30.56
Os05t0110500-02	Rice	nucleus	30.41	29.95
Os01t0618500-01	Rice	nucleus	27.32	29.66
Os03t0669000-01	Rice	cytosol, nucleus, plastid	23.2	28.6
Os07t0633500-00	Rice	nucleus	19.24	27.79
Os01t0618400-01	Rice	nucleus, plasma membrane	26.8	26.26
Os01t0164500-01	Rice	plastid	27.15	24.42
Os07t0517000-01	Rice	nucleus	17.01	18.89
Os02t0826100-01	Rice	cytosol	26.12	18.74
Os12t0481100-01	Rice	nucleus	25.26	18.33
Os08t0416100-01	Rice	nucleus	24.23	16.57
Os06t0526600-01	Rice	mitochondrion	26.12	16.47
Os04t0510400-01	Rice	nucleus	21.65	15.14

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4341211	UniProt:A0A0P0WXH1	ProteinID:BAS98087.1	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlantsGene:Os06g0535100	EnsemblPlants:Os06t0535100-00	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF305	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI000393940A	RefSeq:XP_015642648.1	SEG:seg

Description

RNA helicase 51Similar to predicted protein. (Os06t0535100-00)

Coordinates

chr6:+:20025960..20031157

Molecular Weight (calculated)

65577.3 Da

IEP (calculated)

10.071

GRAVY (calculated)

-0.473

Length

582 amino acids

Sequence
(BLAST)

001: MHPIKLCARS PRPSSKKRKR PAAAAATPPE SEPEPVHNTA ACNSEGENNA TGKRREHNNK KMKEEKSKRK KKQGEGKKGS GILTDKLFSD LPISDLTANA
101: IRDMNYTHLT EIQARSIPPL MLGSDVMASA KTGSGKTLAF LIPAIELLCR LRFSPRNGTG VIVLCPTREL AIQTHNVAKE LMRYHSQTLG YVIGGIDLRG
201: EAEQLAKGIN VLVATPGRLL DHMQKTKSFK YECLKCLIID EADRILEQNF EEQMKQIFKL LPRQGRQTVL FSATQTEKVE DFAKLTFGSK EERQRTLVYV
301: GVDDHESKAT VEGLKQGYCV IPSERRFLVL YAFLKKALSE KTKVMVFFSS CNSVKFHAQL LNFIQIECYD IHGQLKQHQR TSTFFKFHKA EHGILLCTNV
401: AARGLDIPDV DYIVQYDPPD ETKDYIHRVG RTARGDNGKG SAILFLLPKE LQLLIHLKAA NISVSEYVFR QELVPKLQPY LEKIVGGNYI LNRSAKEAYK
501: SYLLAYKSHS MKDIFAIHQL DLTSVAASFC FSEPPKVNLD LESSASKHRK KRNVNTGRRH GIGPSNPYGR KGSDDRRQFA RF

Best Arabidopsis Sequence Match ( AT3G18600.1 )
(BLAST)

001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA

Arabidopsis Description

RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.