Factsheet for Os07t0660000-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0669000-01	Rice	cytosol, nucleus, plastid	74.16	69.92
TraesCS2A01G128700.1	Wheat	nucleus	71.69	69.65
TraesCS2D01G131200.1	Wheat	nucleus	71.69	69.65
Zm00001d048477_P001	Maize	plastid	29.21	69.52
TraesCS6A01G114900.1	Wheat	nucleus	68.54	66.74
TraesCS6D01G103400.1	Wheat	nucleus	66.07	66.22
OQU93356	Sorghum	cytosol	67.19	65.86
Zm00001d014787_P001	Maize	nucleus	66.97	64.09
TraesCS6B01G142500.1	Wheat	mitochondrion, nucleus	68.31	63.33
TraesCS2B01G150800.1	Wheat	mitochondrion	71.46	61.63
HORVU2Hr1G022490.2	Barley	nucleus	66.97	60.45
Solyc10g007550.2.1	Tomato	cytosol, nucleus	58.2	59.0
KRH65120	Soybean	cytosol	57.3	58.09
VIT_01s0010g01890.t01	Wine grape	nucleus	53.26	57.66
CDY42845	Canola	cytosol	57.98	57.46
CDY47007	Canola	cytosol	57.75	57.24
AT5G60990.1	Thale cress	nucleus	58.43	57.02
KRH48210	Soybean	nucleus	40.9	56.88
Bra029342.1-P	Field mustard	cytosol	57.75	56.86
HORVU6Hr1G020570.1	Barley	plastid	69.21	54.42
VIT_11s0065g01090.t01	Wine grape	cytosol	58.43	48.24
GSMUA_Achr8P34380_001	Banana	cytosol	61.35	37.55
Os07t0633500-00	Rice	nucleus	31.01	34.24
Os03t0802700-01	Rice	nucleus	31.91	24.07
Os01t0618500-01	Rice	nucleus	28.54	23.69
Os06t0535100-00	Rice	nucleus	30.56	23.37
Os05t0110500-02	Rice	nucleus	29.89	22.5
Os01t0618400-01	Rice	nucleus, plasma membrane	29.21	21.89
Os01t0164500-01	Rice	plastid	29.44	20.25
Os12t0481100-01	Rice	nucleus	32.36	17.96
Os04t0510400-01	Rice	nucleus	31.46	16.83
Os02t0826100-01	Rice	cytosol	27.42	15.04
Os08t0416100-01	Rice	nucleus	27.87	14.57
Os07t0517000-01	Rice	nucleus	14.61	12.4
Os06t0526600-01	Rice	mitochondrion	24.72	11.92

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0P0X9X6	ProteinID:BAT03043.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	EnsemblPlantsGene:Os07g0660000
EnsemblPlants:Os07t0660000-00	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR24031	PANTHER:PTHR24031:SF78	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000393994D
SEG:seg	:	:	:	:	:

Description

Similar to cDNA clone:J013120J20, full insert sequence. (Os07t0660000-00)

Coordinates

chr7:+:27819750..27823763

Molecular Weight (calculated)

49472.2 Da

IEP (calculated)

9.914

GRAVY (calculated)

-0.210

Length

445 amino acids

Sequence
(BLAST)

001: SHGRGGGGGV GGADDVRGAR GLPGAGEACD AMGWKAPTRI QAEVIPFALQ GRDVIGVGQT GSGKTAAFAL PIIQALLEHE HRPCFFACVL APTRELAIQI
101: AKQFEALGSA ISLQCSVLIG GIPRTSQTIS LAKRPHVVVG TPGRLLDHLT NTKGFSFNKL KYLVLDEADD LLKVDFQKAV DDILNVIPKE RRTFLFSATM
201: TEKVKKLRRA CLKNPVKVEV ASKYSLVDTL RQDLYVVPAK YKDCYLIHVL NKMPGSMIMV FVRTCESTRL LALMLRNLRF KAISISGQMS QDKRLGALNR
301: FRTRDCNILV CTDVASRGLD IQGVDVVINY DFPLNSKDYI HRVGRTARAG QSGYAVSLVN QFEGEFFKLT EQFLGGEEIP ARKVDADEIM ILHERIYDSK
401: RIALKTMNES GYHKRMRRRM EDDEEEVEEA PVSSRSRSLK KSRRR

Best Arabidopsis Sequence Match ( AT5G60990.1 )
(BLAST)

001: MEEENEVVKT FAELGVREEL VKACERLGWK NPSKIQAEAL PFALEGKDVI GLAQTGSGKT GAFAIPILQA LLEYVYDSEP KKGRRPDPAF FACVLSPTRE
101: LAIQIAEQFE ALGADISLRC AVLVGGIDRM QQTIALGKRP HVIVATPGRL WDHMSDTKGF SLKSLKYLVL DEADRLLNED FEKSLNQILE EIPLERKTFL
201: FSATMTKKVR KLQRACLRNP VKIEAASKYS TVDTLKQQYR FVAAKYKDCY LVYILSEMPE STSMIFTRTC DGTRFLALVL RSLGFRAIPI SGQMTQSKRL
301: GALNKFKAGE CNILVCTDVA SRGLDIPSVD VVINYDIPTN SKDYIHRVGR TARAGRSGVG ISLVNQYELE WYIQIEKLIG KKLPEYPAEE DEVLSLLERV
401: AEAKKLSAMN MKESGGRKRR GEDDEESERF LGGNKDRGNK ERGGNKDKKS SKKFKR

Arabidopsis Description

RH10DEAD-box ATP-dependent RNA helicase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.