CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048477_P001	Maize	plastid	39.21	95.19
Zm00001d014787_P001	Maize	nucleus	95.59	93.33
TraesCS2D01G131200.1	Wheat	nucleus	77.53	76.86
TraesCS2A01G128700.1	Wheat	nucleus	77.53	76.86
Os03t0669000-01	Rice	cytosol, nucleus, plastid	77.09	74.15
TraesCS6A01G114900.1	Wheat	nucleus	74.01	73.52
TraesCS6D01G103400.1	Wheat	nucleus	71.37	72.97
TraesCS6B01G142500.1	Wheat	mitochondrion, nucleus	74.67	70.62
TraesCS2B01G150800.1	Wheat	mitochondrion	78.19	68.8
KXG22990	Sorghum	cytosol	66.96	68.31
Os07t0660000-00	Rice	cytosol	65.86	67.19
Solyc10g007550.2.1	Tomato	cytosol, nucleus	64.54	66.74
VIT_01s0010g01890.t01	Wine grape	nucleus	60.13	66.42
HORVU2Hr1G022490.2	Barley	nucleus	71.15	65.52
KRH65120	Soybean	cytosol	62.56	64.69
CDY42845	Canola	cytosol	62.78	63.47
CDY47007	Canola	cytosol	62.56	63.25
Bra029342.1-P	Field mustard	cytosol	62.56	62.83
KRH48210	Soybean	nucleus	43.61	61.88
AT5G60990.1	Thale cress	nucleus	61.67	61.4
HORVU6Hr1G020570.1	Barley	plastid	74.67	59.89
VIT_11s0065g01090.t01	Wine grape	cytosol	64.76	54.55
GSMUA_Achr8P34380_001	Banana	cytosol	64.76	40.44
EER99761	Sorghum	cytosol	40.97	37.05
KXG37786	Sorghum	nucleus	25.33	25.39
EES18259	Sorghum	nucleus	30.84	23.33
EER90714	Sorghum	nucleus	31.72	23.11
EES03287	Sorghum	cytosol	28.19	22.82
OQU76528	Sorghum	nucleus	29.96	22.7
EES01082	Sorghum	mitochondrion, plastid	29.3	22.62
EES00264	Sorghum	nucleus, plastid	30.18	21.27
KXG35997	Sorghum	nucleus	33.7	19.27
OQU76491	Sorghum	nucleus	27.09	18.75
EER99450	Sorghum	nucleus	28.41	17.32
OQU81941	Sorghum	nucleus	31.28	16.86
OQU80427	Sorghum	nucleus	31.06	16.53
EES07789	Sorghum	mitochondrion	27.97	15.43

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8077969	UniProt:C5X0W4	InterPro:DEAD/DEAH_box_helicase_dom	ProteinID:EER95614.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:OQU93356	ProteinID:OQU93356	ProteinID:OQU93356.1	ProteinID:OQU93357.1
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF78	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	EnsemblPlantsGene:SORBI_3001G527300	SUPFAM:SSF52540	unigene:Sbi.12527	UniParc:UPI0001A831E3	RefSeq:XP_002468616.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:79134950..79141571

Molecular Weight (calculated)

50434.1 Da

IEP (calculated)

9.299

GRAVY (calculated)

-0.303

Length

454 amino acids

Sequence
(BLAST)

001: MANGDAAVEA GGNGKEEPAA RQASTFAELG ICAELVEACD AMGWKEPTRI QAEAIPHALQ GKDLIALAQT GSGKTGAFAL PILQELLSNR QAEQSFFACV
101: LSPTRELAIQ IAEQFEALGS AIGLRCSVLV GGVDRVQQVL SIGKRPHIVV GTPGRLLDHL TETKGFSLKK IKYLVLDEAD KLLNVEFEKS LDDILREIPK
201: DRRTFLFSAT MTKKVNKLQR ACLRNPAKVE AASKYSTVDS LKQEFYFVPA DDKDCYLLHV LNERQDSMIM IFVRTCESTR LLALMLRNLG LKAMSISGQM
301: SQDKRLGALN RFKAKDCNIL ICTDVASRGL DIQGVDMVIN YDIPMNSKDY VHRVGRTARA GRSGYAVSLV NQYEAQWFVL IEKLLGKQID QRKVDRDEVM
401: ILKGPISDAK RIALTKLKDS GGHKKRRKAG DDDEEVEDYS HSKRPKSFKK SNRR

Best Arabidopsis Sequence Match ( AT5G60990.1 )
(BLAST)

001: MEEENEVVKT FAELGVREEL VKACERLGWK NPSKIQAEAL PFALEGKDVI GLAQTGSGKT GAFAIPILQA LLEYVYDSEP KKGRRPDPAF FACVLSPTRE
101: LAIQIAEQFE ALGADISLRC AVLVGGIDRM QQTIALGKRP HVIVATPGRL WDHMSDTKGF SLKSLKYLVL DEADRLLNED FEKSLNQILE EIPLERKTFL
201: FSATMTKKVR KLQRACLRNP VKIEAASKYS TVDTLKQQYR FVAAKYKDCY LVYILSEMPE STSMIFTRTC DGTRFLALVL RSLGFRAIPI SGQMTQSKRL
301: GALNKFKAGE CNILVCTDVA SRGLDIPSVD VVINYDIPTN SKDYIHRVGR TARAGRSGVG ISLVNQYELE WYIQIEKLIG KKLPEYPAEE DEVLSLLERV
401: AEAKKLSAMN MKESGGRKRR GEDDEESERF LGGNKDRGNK ERGGNKDKKS SKKFKR

Arabidopsis Description

RH10DEAD-box ATP-dependent RNA helicase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.