CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027279_P001	Maize	nucleus	41.77	94.39
Zm00001d024719_P001	Maize	nucleus	49.53	94.38
Zm00001d039746_P001	Maize	nucleus	96.89	86.07
Zm00001d041799_P001	Maize	cytosol	34.47	84.09
Os01t0164500-01	Rice	plastid	83.23	82.84
TraesCS3B01G116900.1	Wheat	plastid	78.42	78.54
TraesCS3A01G100100.1	Wheat	plastid	78.26	78.26
TraesCS3D01G100800.1	Wheat	plastid	77.95	78.07
HORVU3Hr1G018130.7	Barley	plastid	77.48	73.71
VIT_13s0067g01900.t01	Wine grape	nucleus	62.11	67.23
KRG97683	Soybean	nucleus	60.56	66.21
Solyc02g078880.2.1	Tomato	nucleus	58.07	62.96
GSMUA_Achr8P01870_001	Banana	cytosol	63.51	62.83
AT5G05450.1	Thale cress	nucleus	57.14	62.06
Bra028757.1-P	Field mustard	nucleus	56.83	61.62
Bra009114.1-P	Field mustard	nucleus	55.75	60.34
PGSC0003DMT400057606	Potato	nucleus	57.76	59.71
KRH31184	Soybean	nucleus	60.87	58.95
AT1G71370.1	Thale cress	nucleus	50.93	58.78
AT1G71280.1	Thale cress	nucleus	41.15	56.99
KXG22990	Sorghum	cytosol	21.12	30.56
OQU93356	Sorghum	cytosol	21.27	30.18
KXG37786	Sorghum	nucleus	19.57	27.81
EER90714	Sorghum	nucleus	25.0	25.84
EES03287	Sorghum	cytosol	22.36	25.67
OQU76528	Sorghum	nucleus	23.45	25.21
EER99761	Sorghum	cytosol	19.25	24.7
EES18259	Sorghum	nucleus	22.83	24.5
EES01082	Sorghum	mitochondrion, plastid	21.89	23.98
EER99450	Sorghum	nucleus	25.31	21.88
OQU76491	Sorghum	nucleus	22.2	21.8
KXG35997	Sorghum	nucleus	23.14	18.77
EES07789	Sorghum	mitochondrion	21.58	16.89
OQU80427	Sorghum	nucleus	22.05	16.65
OQU81941	Sorghum	nucleus	20.5	15.68

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8075104	UniProt:C5XNL5	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DUF4217	EnsemblPlants:EES00264	ProteinID:EES00264	ProteinID:EES00264.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF2	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SMART:SM01178	EnsemblPlantsGene:SORBI_3003G058800	SUPFAM:SSF52540	UniParc:UPI0001A8461A
RefSeq:XP_002455144.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:5173266..5177614

Molecular Weight (calculated)

71572.5 Da

IEP (calculated)

9.742

GRAVY (calculated)

-0.432

Length

644 amino acids

Sequence
(BLAST)

001: MAASTAVAAA AAARKGALTD QRFSELSPAL SPEVVEALDR GGFQRCTPVQ AAAIPHLLSH KDVAVDAATG SGKTLAFIVP VVEILRRRSS RPKSHEVLAL
101: IISPTRELSS QIFNVAQPFF ATLNGVSSML LVGGLDIKAE LKKVEEEGAN ILVGTPGKLC DIMHTDALEY KNLEILILDE ADRLLDMGFQ KHINFILSML
201: PKLRRTGLFS ATQTKAVADL SKAGLRNPIR VEVKTEAKST SKDAGQQELG SSKTPLGLRL EYMICEASKK SSQLVDFLVQ NSGKKIMVYF ATCACVDYWA
301: VVLPLINSLK GSPIIAYHGK MKQGLREKAL ASFSALSSGV LVCTDVAARG LDIPSVDLIV QYDPPQDPNV FIHRAGRTAR YDQEGDAIVF LLPKEDTYVE
401: FLKLRGVPLT ERECPANTDD VIQQIRSAAL EDRNVMEKGL RAFVSFVRAY KEHHCSYIFR WKDLEIGKLA MEYGLLQIPS MPEVKHHSLS LEGFIPVDVD
501: ITEIKYKDKA REKQRKKALK RKAEEEAQNP KPDRKRAPEK PEKPKRKKTG KQRQSIQTKE DLDELAHEYR LLKKLKRGDI DEEEYEKLTG FGDSDGEASD
601: GDASNLDERK EKGNKAQKKL KQRGKCKGGS KKFEGRSKMR SKRR

Best Arabidopsis Sequence Match ( AT5G05450.1 )
(BLAST)

001: MDSSANINKA LTETRFSDLE PPLSGDIIEA LNQSDFEFCT PVQAATIPLL CSYKDVAVDA ATGSGKTLAF VVPLVEILRR STSFPPKPHQ VMGVIISPTR
101: ELSTQIYNVA QPFVSTLANV NSVLLVGGRE VKADMKIIEE EGCNVLIGTP GRLSDIMERM EILDFRNLEI LILDEADRLL EMGFQRQVNY IISRLPKQRR
201: TGLFSATQTE GVEELAKAGL RNPVRVEVRA KSKSESSQQL TNSKTPSGLH LEYMECEADK KSSQLVDLLI KNSDKKLIVF FMTCASVDYW GLVLSKIPAL
301: KSISLIPIHG DMKQNARDKA LASFTKASSG ALLCTDVAAR GLDIPGIDYV VQYDPPQDPN MFNHRAGRTA RLGRQGRAIV FLLPKEEAYV EFMRIRRVPL
401: EERKCSEDAS DVIPIIRSAA MKDRAVMEKG LKAFVSFVRA YKEHHCSFIF RWKDLEIGKL AMGYGLLYLP SMSEVKQHRL SSEGFTPVEG VKFEEIKFKD
501: KYREKQRQQN LQVRKEKRQE EKKEKGKRKR VDASASNDPK KASRKLTGKQ RQTIQTAEDE EVMDRDYKLM IKVKKGLIKE DEYERLTGDD DLF

Arabidopsis Description

RH18DEAD-box ATP-dependent RNA helicase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.