Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d024719_P001 | Maize | nucleus | 79.55 | 62.13 |
Zm00001d027279_P001 | Maize | nucleus | 64.39 | 59.65 |
Zm00001d002007_P002 | Maize | cytosol, mitochondrion, plastid | 50.76 | 37.02 |
EES00264 | Sorghum | nucleus, plastid | 84.09 | 34.47 |
Zm00001d039746_P001 | Maize | nucleus | 84.09 | 30.62 |
Os01t0164500-01 | Rice | plastid | 74.24 | 30.29 |
TraesCS3D01G100800.1 | Wheat | plastid | 72.35 | 29.7 |
TraesCS3B01G116900.1 | Wheat | plastid | 72.35 | 29.7 |
TraesCS3A01G100100.1 | Wheat | plastid | 72.35 | 29.66 |
HORVU3Hr1G018130.7 | Barley | plastid | 71.97 | 28.07 |
AT1G71280.1 | Thale cress | nucleus | 45.83 | 26.02 |
KRG97683 | Soybean | nucleus | 56.06 | 25.13 |
VIT_13s0067g01900.t01 | Wine grape | nucleus | 55.68 | 24.71 |
Bra009114.1-P | Field mustard | nucleus | 54.55 | 24.2 |
AT1G71370.1 | Thale cress | nucleus | 50.38 | 23.84 |
AT5G05450.1 | Thale cress | nucleus | 53.41 | 23.78 |
Solyc02g078880.2.1 | Tomato | nucleus | 53.41 | 23.74 |
Bra028757.1-P | Field mustard | nucleus | 53.03 | 23.57 |
GSMUA_Achr8P01870_001 | Banana | cytosol | 57.58 | 23.35 |
PGSC0003DMT400057606 | Potato | nucleus | 53.03 | 22.47 |
KRH31184 | Soybean | nucleus | 54.17 | 21.5 |
Zm00001d000431_P001 | Maize | plastid | 26.52 | 14.4 |
Zm00001d014787_P001 | Maize | nucleus | 24.24 | 13.76 |
Zm00001d044203_P001 | Maize | plasma membrane | 24.24 | 11.43 |
Zm00001d022246_P001 | Maize | cytosol | 21.97 | 11.15 |
Zm00001d013056_P001 | Maize | nucleus | 27.27 | 10.98 |
Zm00001d023501_P001 | Maize | nucleus | 24.62 | 10.78 |
Zm00001d044208_P001 | Maize | plastid | 23.86 | 10.75 |
Zm00001d010225_P001 | Maize | plasma membrane | 17.8 | 9.14 |
Zm00001d006497_P002 | Maize | nucleus | 25.0 | 8.82 |
Zm00001d018516_P002 | Maize | mitochondrion | 23.86 | 7.7 |
Zm00001d021127_P001 | Maize | nucleus, plasma membrane | 21.97 | 7.53 |
Zm00001d006113_P001 | Maize | nucleus | 22.35 | 7.48 |
Zm00001d003031_P002 | Maize | nucleus | 23.48 | 7.33 |
Zm00001d046097_P001 | Maize | mitochondrion | 24.24 | 6.84 |
Zm00001d050315_P001 | Maize | nucleus | 20.08 | 6.31 |
Zm00001d048477_P001 | Maize | plastid | 4.17 | 5.88 |
Zm00001d032317_P001 | Maize | nucleus | 4.55 | 2.45 |
Protein Annotations
Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A1D6MY99 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 |
InterPro:Helicase_ATP-bd | InterPro:IPR014001 | InterPro:IPR014014 | ProteinID:ONM33701.1 | InterPro:P-loop_NTPase | PFAM:PF00270 |
PFscan:PS51192 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF2 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 |
SUPFAM:SSF52540 | UniParc:UPI000842C588 | EnsemblPlantsGene:Zm00001d041799 | EnsemblPlants:Zm00001d041799_P001 | EnsemblPlants:Zm00001d041799_T001 | SEG:seg |
Description
DEAD-box ATP-dependent RNA helicase 18
Coordinates
chr3:+:138779227..138794291
Molecular Weight (calculated)
28972.4 Da
IEP (calculated)
8.163
GRAVY (calculated)
0.156
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASMAASAA QKGALTDQRF SELSPTLSPE VVEALDRGGF QRCTPMQAAA IPHLLSHKNV IVDGATSSGK TLAFIVPIVE ILHHRSSPPK SHEVLALIIS
101: PKRELSSHIF NLAQPFFATL NGVSSMFLVG GLDIKAELKR VEEEGANILV GTPRKLFDIM HIDALDCSLQ NHNLVLVQYM ICEASKKSSQ LVDFLVQNSG
201: KKIMVYFATC ACVDYWAVVL PLINSLKGSP IIAYHGKMKQ VGRAKHFFHA FPVQKYETHF DCLE
101: PKRELSSHIF NLAQPFFATL NGVSSMFLVG GLDIKAELKR VEEEGANILV GTPRKLFDIM HIDALDCSLQ NHNLVLVQYM ICEASKKSSQ LVDFLVQNSG
201: KKIMVYFATC ACVDYWAVVL PLINSLKGSP IIAYHGKMKQ VGRAKHFFHA FPVQKYETHF DCLE
001: MDSSPPNTII EEAPPRFSEL KPPLSEDIIE ALDRSGFEVC TPVQAETIPF LCSHKDVVVD AATGSGKTLA FLLPFIEIIR RSNSYPPKPH QVMGVIISPT
101: RELSAQIHKV ARAVRLDFAK CREVEADMNT LEEEGANLLI GTPGRLSDMM KRMEFLDFRN LEILILDEAD RLLDMGFQKQ VNYIISRLPK QRRTGLFSAT
201: QTQAVADLAK AGLRNPYLKC EADQKSSQLV HLLIENKNKK LVVFFMTCAC VDYWGLVISK IPSLKSISFF PTHGKMDQKG RDTALASFTE ASSGVLLCTD
301: VAARGLDIPG IVYIRSLAIK DREVLEKGLK AFVSFVRAYK EHQCSYIFSW KGLEIGKLAM GYGILSFPYI SEVKQDRIGI VGFTPVQGIT FEDIKFKNKS
401: REKQRQQNLL ARKDKLQQEK RGKRKKSSKE AVDDSNKASR KRKLTGRQRQ TIQTAQDEEE MNLRL
101: RELSAQIHKV ARAVRLDFAK CREVEADMNT LEEEGANLLI GTPGRLSDMM KRMEFLDFRN LEILILDEAD RLLDMGFQKQ VNYIISRLPK QRRTGLFSAT
201: QTQAVADLAK AGLRNPYLKC EADQKSSQLV HLLIENKNKK LVVFFMTCAC VDYWGLVISK IPSLKSISFF PTHGKMDQKG RDTALASFTE ASSGVLLCTD
301: VAARGLDIPG IVYIRSLAIK DREVLEKGLK AFVSFVRAYK EHQCSYIFSW KGLEIGKLAM GYGILSFPYI SEVKQDRIGI VGFTPVQGIT FEDIKFKNKS
401: REKQRQQNLL ARKDKLQQEK RGKRKKSSKE AVDDSNKASR KRKLTGRQRQ TIQTAQDEEE MNLRL
Arabidopsis Description
RH55DEAD-box ATP-dependent RNA helicase 55 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVV4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.