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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 2
  • plastid 1
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d024719_P001 Maize nucleus 79.55 62.13
Zm00001d027279_P001 Maize nucleus 64.39 59.65
Zm00001d002007_P002 Maize cytosol, mitochondrion, plastid 50.76 37.02
EES00264 Sorghum nucleus, plastid 84.09 34.47
Zm00001d039746_P001 Maize nucleus 84.09 30.62
Os01t0164500-01 Rice plastid 74.24 30.29
TraesCS3D01G100800.1 Wheat plastid 72.35 29.7
TraesCS3B01G116900.1 Wheat plastid 72.35 29.7
TraesCS3A01G100100.1 Wheat plastid 72.35 29.66
HORVU3Hr1G018130.7 Barley plastid 71.97 28.07
AT1G71280.1 Thale cress nucleus 45.83 26.02
KRG97683 Soybean nucleus 56.06 25.13
VIT_13s0067g01900.t01 Wine grape nucleus 55.68 24.71
Bra009114.1-P Field mustard nucleus 54.55 24.2
AT1G71370.1 Thale cress nucleus 50.38 23.84
AT5G05450.1 Thale cress nucleus 53.41 23.78
Solyc02g078880.2.1 Tomato nucleus 53.41 23.74
Bra028757.1-P Field mustard nucleus 53.03 23.57
GSMUA_Achr8P01870_001 Banana cytosol 57.58 23.35
PGSC0003DMT400057606 Potato nucleus 53.03 22.47
KRH31184 Soybean nucleus 54.17 21.5
Zm00001d000431_P001 Maize plastid 26.52 14.4
Zm00001d014787_P001 Maize nucleus 24.24 13.76
Zm00001d044203_P001 Maize plasma membrane 24.24 11.43
Zm00001d022246_P001 Maize cytosol 21.97 11.15
Zm00001d013056_P001 Maize nucleus 27.27 10.98
Zm00001d023501_P001 Maize nucleus 24.62 10.78
Zm00001d044208_P001 Maize plastid 23.86 10.75
Zm00001d010225_P001 Maize plasma membrane 17.8 9.14
Zm00001d006497_P002 Maize nucleus 25.0 8.82
Zm00001d018516_P002 Maize mitochondrion 23.86 7.7
Zm00001d021127_P001 Maize nucleus, plasma membrane 21.97 7.53
Zm00001d006113_P001 Maize nucleus 22.35 7.48
Zm00001d003031_P002 Maize nucleus 23.48 7.33
Zm00001d046097_P001 Maize mitochondrion 24.24 6.84
Zm00001d050315_P001 Maize nucleus 20.08 6.31
Zm00001d048477_P001 Maize plastid 4.17 5.88
Zm00001d032317_P001 Maize nucleus 4.55 2.45
Protein Annotations
Gene3D:3.40.50.300MapMan:35.1UniProt:A0A1D6MY99InterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166GO:GO:0003674
GO:GO:0003676GO:GO:0003824GO:GO:0004386GO:GO:0005488GO:GO:0005524GO:GO:0016787
InterPro:Helicase_ATP-bdInterPro:IPR014001InterPro:IPR014014ProteinID:ONM33701.1InterPro:P-loop_NTPasePFAM:PF00270
PFscan:PS51192PFscan:PS51195PANTHER:PTHR24031PANTHER:PTHR24031:SF2InterPro:RNA_helicase_DEAD_Q_motifSMART:SM00487
SUPFAM:SSF52540UniParc:UPI000842C588EnsemblPlantsGene:Zm00001d041799EnsemblPlants:Zm00001d041799_P001EnsemblPlants:Zm00001d041799_T001SEG:seg
Description
DEAD-box ATP-dependent RNA helicase 18
Coordinates
chr3:+:138779227..138794291
Molecular Weight (calculated)
28972.4 Da
IEP (calculated)
8.163
GRAVY (calculated)
0.156
Length
264 amino acids
Sequence
(BLAST)
001: MAASMAASAA QKGALTDQRF SELSPTLSPE VVEALDRGGF QRCTPMQAAA IPHLLSHKNV IVDGATSSGK TLAFIVPIVE ILHHRSSPPK SHEVLALIIS
101: PKRELSSHIF NLAQPFFATL NGVSSMFLVG GLDIKAELKR VEEEGANILV GTPRKLFDIM HIDALDCSLQ NHNLVLVQYM ICEASKKSSQ LVDFLVQNSG
201: KKIMVYFATC ACVDYWAVVL PLINSLKGSP IIAYHGKMKQ VGRAKHFFHA FPVQKYETHF DCLE
Best Arabidopsis Sequence Match ( AT1G71280.1 )
(BLAST)
001: MDSSPPNTII EEAPPRFSEL KPPLSEDIIE ALDRSGFEVC TPVQAETIPF LCSHKDVVVD AATGSGKTLA FLLPFIEIIR RSNSYPPKPH QVMGVIISPT
101: RELSAQIHKV ARAVRLDFAK CREVEADMNT LEEEGANLLI GTPGRLSDMM KRMEFLDFRN LEILILDEAD RLLDMGFQKQ VNYIISRLPK QRRTGLFSAT
201: QTQAVADLAK AGLRNPYLKC EADQKSSQLV HLLIENKNKK LVVFFMTCAC VDYWGLVISK IPSLKSISFF PTHGKMDQKG RDTALASFTE ASSGVLLCTD
301: VAARGLDIPG IVYIRSLAIK DREVLEKGLK AFVSFVRAYK EHQCSYIFSW KGLEIGKLAM GYGILSFPYI SEVKQDRIGI VGFTPVQGIT FEDIKFKNKS
401: REKQRQQNLL ARKDKLQQEK RGKRKKSSKE AVDDSNKASR KRKLTGRQRQ TIQTAQDEEE MNLRL
Arabidopsis Description
RH55DEAD-box ATP-dependent RNA helicase 55 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVV4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.