Factsheet for Bra028757.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04952	Canola	nucleus	99.49	99.49
CDY14112	Canola	cytosol	98.65	98.65
Bra009114.1-P	Field mustard	nucleus	89.73	89.58
AT5G05450.1	Thale cress	nucleus	86.36	86.51
VIT_13s0067g01900.t01	Wine grape	nucleus	72.73	72.61
KRG97683	Soybean	nucleus	70.54	71.14
Solyc02g078880.2.1	Tomato	nucleus	68.69	68.69
PGSC0003DMT400057606	Potato	nucleus	68.35	65.17
KRH31184	Soybean	nucleus	69.7	62.26
Zm00001d027279_P001	Maize	nucleus	28.96	60.35
Zm00001d024719_P001	Maize	nucleus	33.84	59.47
GSMUA_Achr8P01870_001	Banana	cytosol	63.47	57.91
Os01t0164500-01	Rice	plastid	62.63	57.5
TraesCS3B01G116900.1	Wheat	plastid	62.12	57.39
TraesCS3A01G100100.1	Wheat	plastid	61.95	57.14
TraesCS3D01G100800.1	Wheat	plastid	61.62	56.92
EES00264	Sorghum	nucleus, plastid	61.62	56.83
HORVU3Hr1G018130.7	Barley	plastid	62.12	54.51
Zm00001d041799_P001	Maize	cytosol	23.57	53.03
Zm00001d039746_P001	Maize	nucleus	61.45	50.34
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	25.42	41.71
Bra029342.1-P	Field mustard	cytosol	23.06	30.31
Bra022336.1-P	Field mustard	nucleus	26.6	27.82
Bra037574.1-P	Field mustard	nucleus	26.43	27.74
Bra024428.1-P	Field mustard	nucleus	26.09	26.23
Bra001713.1-P	Field mustard	nucleus	26.6	26.07
Bra028652.1-P	Field mustard	nucleus	23.4	25.69
Bra026724.1-P	Field mustard	nucleus	20.88	25.51
Bra009356.1-P	Field mustard	cytosol	22.22	23.53
Bra004584.1-P	Field mustard	nucleus	23.74	22.96
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	21.55	20.35
Bra002946.1-P	Field mustard	nucleus	25.08	20.03
Bra038650.1-P	Field mustard	mitochondrion	24.07	19.25
Bra009355.1-P	Field mustard	mitochondrion, plastid	23.74	18.5
Bra027808.1-P	Field mustard	mitochondrion	21.21	16.13
Bra040743.1-P	Field mustard	nucleus	23.57	16.02
Bra003691.1-P	Field mustard	cytosol	22.9	15.96
Bra038492.1-P	Field mustard	nucleus	21.72	14.21

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra028757	EnsemblPlants:Bra028757.1	EnsemblPlants:Bra028757.1-P	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4EIZ2	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF2	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI000254311D	SEG:seg	:

Description

AT5G05450 (E=3e-279) | DEAD/DEAH box helicase, putative (RH18)

Coordinates

chrA02:+:2186373..2189509

Molecular Weight (calculated)

66659.5 Da

IEP (calculated)

9.055

GRAVY (calculated)

-0.421

Length

594 amino acids

Sequence
(BLAST)

001: MDSSSSNTNK ALTETRFSDL EPPLSEDIIE ALERSGFEFC TPVQAATIPL LCRHKDVAVD AATGSGKTLA FVLPLIEILR RSTSYPPKPH QVMGVIISPT
101: RELSTQIYNV AQPFVSTLPN VNSVLLVGGR EVKSDMSTIE EGGCNLLIGT PGRLSDIMER MEILDFRNLE ILILDEADRL LEMGFQKQVN SIISRLPKQR
201: RTGLFSATQT EGVEELAKAG LRNPVRVEVR AESKSESSSQ QLTNSKVPSG LHLEYLVCEA DKKSSQLVDL LVENEKKKLI VYFMTCASVD YWGLVLSKIP
301: ALKSISLIPI HGDMKQNARD KALASFTEAS SGVLLCTDVA ARGLDIPGID YVVQYDPPQD PNMFNHRVGR TARLGKEGRA IVFLLPEEED YVEFMRRRGV
401: PCQEKKLSEE ASDVIPIIRS LAMKDRAVLE KGLKAFVSFV RGYKEHHCSY IFRWKSLEIG KLAMGYGLLY LPSMSEVKQH RLSSEGFTPV TDVKFEDIKF
501: KDKSREKQRK QNMQARKEKR QQEKKEKGKK NSKKAVVAAA TDSNKRKLTG KQRQTIQTAE DEEEMARDYR LLKKLKKGSI KEDDFAKLTG ADDF

Best Arabidopsis Sequence Match ( AT5G05450.1 )
(BLAST)

001: MDSSANINKA LTETRFSDLE PPLSGDIIEA LNQSDFEFCT PVQAATIPLL CSYKDVAVDA ATGSGKTLAF VVPLVEILRR STSFPPKPHQ VMGVIISPTR
101: ELSTQIYNVA QPFVSTLANV NSVLLVGGRE VKADMKIIEE EGCNVLIGTP GRLSDIMERM EILDFRNLEI LILDEADRLL EMGFQRQVNY IISRLPKQRR
201: TGLFSATQTE GVEELAKAGL RNPVRVEVRA KSKSESSQQL TNSKTPSGLH LEYMECEADK KSSQLVDLLI KNSDKKLIVF FMTCASVDYW GLVLSKIPAL
301: KSISLIPIHG DMKQNARDKA LASFTKASSG ALLCTDVAAR GLDIPGIDYV VQYDPPQDPN MFNHRAGRTA RLGRQGRAIV FLLPKEEAYV EFMRIRRVPL
401: EERKCSEDAS DVIPIIRSAA MKDRAVMEKG LKAFVSFVRA YKEHHCSFIF RWKDLEIGKL AMGYGLLYLP SMSEVKQHRL SSEGFTPVEG VKFEEIKFKD
501: KYREKQRQQN LQVRKEKRQE EKKEKGKRKR VDASASNDPK KASRKLTGKQ RQTIQTAEDE EVMDRDYKLM IKVKKGLIKE DEYERLTGDD DLF

Arabidopsis Description

RH18DEAD-box ATP-dependent RNA helicase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.