Factsheet for GSMUA_Achr8P01870_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g01900.t01	Wine grape	nucleus	67.28	73.61
KRG97683	Soybean	nucleus	66.05	73.01
Solyc02g078880.2.1	Tomato	nucleus	64.21	70.37
PGSC0003DMT400057606	Potato	nucleus	63.9	66.77
Zm00001d024719_P001	Maize	nucleus	34.1	65.68
Zm00001d027279_P001	Maize	nucleus	28.73	65.61
KRH31184	Soybean	nucleus	66.82	65.41
TraesCS3B01G116900.1	Wheat	plastid	64.52	65.32
AT5G05450.1	Thale cress	nucleus	59.14	64.92
TraesCS3A01G100100.1	Wheat	plastid	64.21	64.91
TraesCS3D01G100800.1	Wheat	plastid	63.9	64.7
Os01t0164500-01	Rice	plastid	64.21	64.61
EES00264	Sorghum	nucleus, plastid	62.83	63.51
Bra028757.1-P	Field mustard	nucleus	57.91	63.47
CDY04952	Canola	nucleus	57.76	63.3
CDY14112	Canola	cytosol	57.45	62.96
Bra009114.1-P	Field mustard	nucleus	57.3	62.69
CDX70149	Canola	nucleus	57.3	62.37
HORVU3Hr1G018130.7	Barley	plastid	64.52	62.04
AT1G71370.1	Thale cress	nucleus	50.69	59.14
AT1G71280.1	Thale cress	nucleus	41.63	58.28
Zm00001d041799_P001	Maize	cytosol	23.35	57.58
CDX96202	Canola	cytosol	24.27	56.83
Zm00001d039746_P001	Maize	nucleus	63.13	56.69
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	25.5	45.86
GSMUA_Achr10P...	Banana	cytosol	24.12	30.37
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	23.35	27.24
GSMUA_Achr3P14380_001	Banana	cytosol	18.59	27.07
GSMUA_Achr7P18160_001	Banana	nucleus	22.27	24.83
GSMUA_Achr5P09910_001	Banana	nucleus	16.59	22.78
GSMUA_Achr6P00390_001	Banana	cytosol, mitochondrion	25.35	22.48
GSMUA_Achr8P12970_001	Banana	nucleus	23.66	20.1
GSMUA_Achr8P04210_001	Banana	cytosol	20.89	18.38
GSMUA_Achr10P...	Banana	mitochondrion	21.35	18.36
GSMUA_Achr8P34380_001	Banana	cytosol	20.43	18.29
GSMUA_Achr9P14580_001	Banana	nucleus	21.2	16.81
GSMUA_Achr5P10150_001	Banana	nucleus	19.51	16.49

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr8G01870_001
EnsemblPlants:GSMUA_Achr8P01870_001	EnsemblPlants:GSMUA_Achr8T01870_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M0TLT9	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF2
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540
TMHMM:TMhelix	UniParc:UPI0002955A65	SEG:seg	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 18 [Source:GMGC_GENE;Acc:GSMUA_Achr8G01870_001]

Coordinates

chr8:+:1402838..1410515

Molecular Weight (calculated)

73469.7 Da

IEP (calculated)

10.186

GRAVY (calculated)

-0.364

Length

651 amino acids

Sequence
(BLAST)

001: MAESEPSNRA LTTTRFSELN PPLSEPVIEA LTLAGFQFCT PVQAATIPLL CGHKDVAVDA ATGSGKTLAF VVPFVEILRR YPSPPKPHQV MGMIISPTRE
101: LSSQIYHVAQ PFFATVQNLK SILLVGGLDI RTDIRKIENE GANILVGTPG KLHDIMERLD VLDFRNLEQI LILDEADRLL DMGFQKQLTY IISRLPKLRR
201: TGLFSATQTE AVDELSKAGL RNPVKVEVRV EAKALGDMAS TQELASSRTP LGLHIEYMVC EAQNKLSYLV DFISRNMSKK IIVYFMTCAC VDYWGVILPQ
301: LIALKGCPLI PLHGRMKQIA REKALASFTN LSSGVLLCTD VAARGLDIPG VDWILQYDSP QDPNVFIHRV GRTARIGRQG SAVVFLLPKE DAYVEFLRLR
401: RVPLKERKSL DLEVKRIRLK LIRSAAKEDR DVMEKGIKAF VSYIRAYKEH HCSFIFRWKE LEIGKLAMGY GLLQIPSMPE VKHHSLSVDG FSPVDGIDLS
501: QIKYKDKARE RHRLKILQSK QAEEPKQNRV KKIPDDNVAI TRKKTGRQRR ATQTKEDDEE LENEYRLLKK LKRGLIDESE YEKLTGFGNL EEGSSESNSK
601: DYGAELSTGS KSKRAKIKRG KNAKNTERSR ARKNKKGSKM MRLKMIKNTR A

Best Arabidopsis Sequence Match ( AT5G05450.1 )
(BLAST)

001: MDSSANINKA LTETRFSDLE PPLSGDIIEA LNQSDFEFCT PVQAATIPLL CSYKDVAVDA ATGSGKTLAF VVPLVEILRR STSFPPKPHQ VMGVIISPTR
101: ELSTQIYNVA QPFVSTLANV NSVLLVGGRE VKADMKIIEE EGCNVLIGTP GRLSDIMERM EILDFRNLEI LILDEADRLL EMGFQRQVNY IISRLPKQRR
201: TGLFSATQTE GVEELAKAGL RNPVRVEVRA KSKSESSQQL TNSKTPSGLH LEYMECEADK KSSQLVDLLI KNSDKKLIVF FMTCASVDYW GLVLSKIPAL
301: KSISLIPIHG DMKQNARDKA LASFTKASSG ALLCTDVAAR GLDIPGIDYV VQYDPPQDPN MFNHRAGRTA RLGRQGRAIV FLLPKEEAYV EFMRIRRVPL
401: EERKCSEDAS DVIPIIRSAA MKDRAVMEKG LKAFVSFVRA YKEHHCSFIF RWKDLEIGKL AMGYGLLYLP SMSEVKQHRL SSEGFTPVEG VKFEEIKFKD
501: KYREKQRQQN LQVRKEKRQE EKKEKGKRKR VDASASNDPK KASRKLTGKQ RQTIQTAEDE EVMDRDYKLM IKVKKGLIKE DEYERLTGDD DLF

Arabidopsis Description

RH18DEAD-box ATP-dependent RNA helicase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.