CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028757.1-P	Field mustard	nucleus	98.65	98.65
CDY04952	Canola	nucleus	98.65	98.65
CDX70149	Canola	nucleus	89.73	89.13
AT5G05450.1	Thale cress	nucleus	85.86	86.0
VIT_13s0067g01900.t01	Wine grape	nucleus	72.56	72.44
CDX96202	Canola	cytosol	33.5	71.58
KRG97683	Soybean	nucleus	70.37	70.97
Solyc02g078880.2.1	Tomato	nucleus	68.69	68.69
PGSC0003DMT400057606	Potato	nucleus	68.35	65.17
KRH31184	Soybean	nucleus	69.53	62.11
GSMUA_Achr8P01870_001	Banana	cytosol	62.96	57.45
CDY42845	Canola	cytosol	23.06	30.51
CDY47007	Canola	cytosol	22.9	30.29
CDX99342	Canola	nucleus	26.43	27.64
CDX92251	Canola	nucleus	26.43	27.59
CDX95512	Canola	nucleus	26.43	27.54
CDY18530	Canola	nucleus	26.26	27.46
CDX82336	Canola	nucleus	26.43	27.4
CDX75974	Canola	nucleus	26.43	26.98
CDY36514	Canola	nucleus	25.93	26.42
CDY40740	Canola	cytosol	23.74	26.06
CDY08740	Canola	nucleus	25.93	25.93
CDY52844	Canola	cytosol	21.04	25.67
CDX81759	Canola	cytosol	21.04	25.61
CDY44780	Canola	mitochondrion	23.23	23.88
CDY17287	Canola	nucleus	23.91	21.71
CDX79974	Canola	nucleus	23.91	20.64
CDY23886	Canola	plasma membrane	23.91	20.26
CDY41525	Canola	mitochondrion	23.74	19.83
CDX84428	Canola	mitochondrion	23.4	19.66
CDY40519	Canola	nucleus	23.06	18.07
CDX69933	Canola	cytosol	4.04	17.65
CDY53643	Canola	nucleus	23.74	16.71
CDY50846	Canola	nucleus	23.57	16.69
CDY49890	Canola	mitochondrion	21.21	16.15
CDY45370	Canola	mitochondrion	21.21	16.11
CDY52719	Canola	nucleus, plastid	22.39	16.04
CDX79187	Canola	cytosol	22.9	16.04
CDX68066	Canola	cytosol	22.9	15.96
CDY34979	Canola	nucleus, plastid	22.05	15.75
CDY32273	Canola	nucleus	22.05	14.35
CDY21554	Canola	mitochondrion	24.41	10.67
CDX69935	Canola	mitochondrion	24.24	10.44

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078FME8	UniProt:A0A078FME8	EnsemblPlants:CDY14112	ProteinID:CDY14112
ProteinID:CDY14112.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00078655001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF2	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI0004EDBA54
SEG:seg	:	:	:	:	:

Description

BnaC02g02290DRNA helicase [Source:UniProtKB/TrEMBL;Acc:A0A078FME8]

Coordinates

chrLK032040:-:491423..494829

Molecular Weight (calculated)

66544.3 Da

IEP (calculated)

8.838

GRAVY (calculated)

-0.401

Length

594 amino acids

Sequence
(BLAST)

001: MDPSSSNTNK ALTETRFSDL EPPLSEDIIE ALERSGFEFC TPVQAATIPL LCRHKDVAVD AATGSGKTLA FVLPLIEILR RSTSYPPKAH QVMGVIISPT
101: RELSTQIYNV AQPFVSTLPN VNSVLLVGGR EVKSDMSTIE EGGCNLLIGT PGRLSDIMER MEILDFRNLE ILILDEADRL LEMGFQKQVN SIISRLPKQR
201: RTGLFSATQT EGVEELAKAG LRNPVRVEVR AESKSESSSQ QLTNSKVPSG LHLEYLVCEA DKKSSQLVDL LVENAKRKLI VYFMTCASVD YWGLVLSKIP
301: ALKSISLIPI HGDMKQNARD KALASFTEAS SGVLLCTDVA ARGLDIPGID YVVQYDPPQD PNMFNHRVGR TARLGKEGRA IVFLLPEEED YVEFMRRRGV
401: PCQEKECSEE ASDVIPIIRS LAMKDRAVLE KGLKAFVSFV RGYKEHHCSY IFRWKSLEIG KLAMGYGLLY LPSMSEVKQH RLSSEGFTPV ADVKFEDIKF
501: KDKSREKQRK QNMQARKEKR QQEKKEKGKK NSKKAVVAAA ADSNKRKLTG KQRQTIQTAE DEEEMARDYR LLKKLKKGSI KEDDFAKLTG ADDF

Best Arabidopsis Sequence Match ( AT5G05450.1 )
(BLAST)

001: MDSSANINKA LTETRFSDLE PPLSGDIIEA LNQSDFEFCT PVQAATIPLL CSYKDVAVDA ATGSGKTLAF VVPLVEILRR STSFPPKPHQ VMGVIISPTR
101: ELSTQIYNVA QPFVSTLANV NSVLLVGGRE VKADMKIIEE EGCNVLIGTP GRLSDIMERM EILDFRNLEI LILDEADRLL EMGFQRQVNY IISRLPKQRR
201: TGLFSATQTE GVEELAKAGL RNPVRVEVRA KSKSESSQQL TNSKTPSGLH LEYMECEADK KSSQLVDLLI KNSDKKLIVF FMTCASVDYW GLVLSKIPAL
301: KSISLIPIHG DMKQNARDKA LASFTKASSG ALLCTDVAAR GLDIPGIDYV VQYDPPQDPN MFNHRAGRTA RLGRQGRAIV FLLPKEEAYV EFMRIRRVPL
401: EERKCSEDAS DVIPIIRSAA MKDRAVMEKG LKAFVSFVRA YKEHHCSFIF RWKDLEIGKL AMGYGLLYLP SMSEVKQHRL SSEGFTPVEG VKFEEIKFKD
501: KYREKQRQQN LQVRKEKRQE EKKEKGKRKR VDASASNDPK KASRKLTGKQ RQTIQTAEDE EVMDRDYKLM IKVKKGLIKE DEYERLTGDD DLF

Arabidopsis Description

RH18DEAD-box ATP-dependent RNA helicase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.