CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21554	Canola	mitochondrion	95.79	97.2
Bra009355.1-P	Field mustard	mitochondrion, plastid	53.52	96.85
CDX69933	Canola	cytosol	8.99	91.18
CDY40740	Canola	cytosol	30.75	78.37
AT5G08610.1	Thale cress	mitochondrion, plastid	46.77	75.88
CDY44780	Canola	mitochondrion	31.76	75.78
CDY41525	Canola	mitochondrion	35.61	69.06
CDX84428	Canola	mitochondrion	35.39	69.02
Os01t0618500-01	Rice	nucleus	25.02	64.37
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	24.58	63.01
TraesCS3A01G222500.1	Wheat	nucleus, plastid	24.22	62.08
EES03287	Sorghum	cytosol	25.24	62.03
TraesCS3B01G252700.2	Wheat	nucleus	21.39	61.84
Zm00001d044208_P001	Maize	plastid	26.25	61.77
TraesCS3D01G230300.1	Wheat	nucleus	24.08	61.71
EES01082	Sorghum	mitochondrion, plastid	26.18	61.39
Os01t0618400-01	Rice	nucleus, plasma membrane	26.25	60.94
VIT_15s0046g01010.t01	Wine grape	plastid	33.94	60.86
Zm00001d044203_P001	Maize	plasma membrane	24.66	60.71
KRH47920	Soybean	nucleus	30.53	59.89
TraesCS3D01G230400.2	Wheat	mitochondrion	25.38	59.52
TraesCS3A01G222700.1	Wheat	mitochondrion	25.31	59.35
TraesCS3B01G252600.1	Wheat	plastid	25.09	59.15
OQU76491	Sorghum	nucleus	26.4	55.49
GSMUA_Achr10P...	Banana	mitochondrion	29.51	53.76
KRH06491	Soybean	nucleus	31.11	53.23
GSMUA_Achr8P04210_001	Banana	cytosol	28.28	52.7
Solyc01g095740.2.1	Tomato	nucleus	32.56	51.61
PGSC0003DMT400000611	Potato	mitochondrion	31.54	49.94
Zm00001d046097_P001	Maize	mitochondrion	28.79	42.41
Os06t0526600-01	Rice	mitochondrion	27.92	41.71
TraesCS7D01G328100.1	Wheat	mitochondrion	28.35	40.77
TraesCS7A01G350700.1	Wheat	mitochondrion	28.35	40.39
TraesCS7B01G232200.1	Wheat	mitochondrion	28.28	40.25
CDY45370	Canola	mitochondrion	21.97	38.75
CDY49890	Canola	mitochondrion	21.83	38.59
CDY47007	Canola	cytosol	8.92	27.39
CDY42845	Canola	cytosol	8.92	27.39
CDX82336	Canola	nucleus	11.31	27.23
CDX99342	Canola	nucleus	11.17	27.11
CDX92251	Canola	nucleus	11.17	27.07
CDY18530	Canola	nucleus	11.1	26.94
CDX75974	Canola	nucleus	11.24	26.63
CDX95512	Canola	nucleus	10.95	26.49
CDY36514	Canola	nucleus	11.1	26.24
CDY08740	Canola	nucleus	11.1	25.76
CDX81759	Canola	cytosol	8.99	25.41
CDY52844	Canola	cytosol	8.85	25.05
CDX96202	Canola	cytosol	5.0	24.82
CDY14112	Canola	cytosol	10.44	24.24
CDY04952	Canola	nucleus	10.44	24.24
CDX70149	Canola	nucleus	10.37	23.91
CDX79974	Canola	nucleus	10.3	20.64
CDY23886	Canola	plasma membrane	10.15	19.97
CDY40519	Canola	nucleus	10.88	19.79
CDY17287	Canola	nucleus	9.35	19.72
CDY50846	Canola	nucleus	10.95	18.0
CDY53643	Canola	nucleus	10.95	17.89
CDY52719	Canola	nucleus, plastid	10.59	17.61
CDY34979	Canola	nucleus, plastid	10.44	17.31
CDX79187	Canola	cytosol	9.43	15.33
CDX68066	Canola	cytosol	9.43	15.26
CDY32273	Canola	nucleus	10.01	15.12

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078BYV9	EnsemblPlants:CDX69935	ProteinID:CDX69935	ProteinID:CDX69935.1
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
EnsemblPlantsGene:GSBRNA2T00136012001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF528	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0004EDEF57	SEG:seg	:	:	:	:

Description

BnaA10g22840D

Coordinates

chrLK031790:-:2399316..2407323

Molecular Weight (calculated)

153399.0 Da

IEP (calculated)

10.031

GRAVY (calculated)

-0.404

Length

1379 amino acids

Sequence
(BLAST)

0001: MPLKFPLGVR FITHSLPCTH LASSMNSAAL IYSFRAVPVI SKALPSRLTC LGLCSRVSFS TRPEFGRRGE IRASKSLIED EAELSDWVSD LRTSSVRGKF
0101: TSDEDEAVQE RVRRNVERDD GRGPPRRGRE GQADRFGKEG EIDRFGDSNR RRTEPVRNNR FGDREGARNG RVQGRSGESS FRGRNERNVD SGFRRERGME
0201: TNKGLGKQTR GLRQEEEDSS DEVVLGGIDD LLSEVSGDDD SEDDEVFVGK VVKGVEADMP RTDTAKTSDS YLSKTRFDQF PLSPLSLRAI KDAGFETMTV
0301: VQEATLPIIL KGKDVLAKAK TGTGKTVAFL LPSIEAVIKS PPASRDSRQS PIVVLVVCPT RELASQAAAE ANTLLKYHSS IGVQVVIGGT KLPTEQRRMQ
0401: ANPCQILVAT PGRLKDHIEN TSGFATRLNG VKVLVLDEAD HLLDMGFRRD IERIIAAVPK QRQTFLFSAT VPEEVRQICH IALKRDHEFI NCVQEGSGET
0501: HQKVKQMYMI ASLDRHFSLL YVLLKEHMAD NPDYKVIIFC TTAMVTRLVA DLLGQLSLNV REIHSRKPQG YRTKVSDEFR KSKSIILVTS DVSARGVDYP
0601: DVSLVVQMGL PSDREQYIHR LGRTGRKGKE GEGVLMLAPW EEYFLSSVKD LPINKSPLPP VDPEAVKKVQ RGLNQVEMKN KEAAYQAWLG YYKSQKMIAR
0701: DTTRLVELAN EFSRSMGLDM PPAIPKNVLG KMGLKNVPGL RTKLCKCNLF SFLQTLDKSL LDSSLALNKP KEKLDYQASP THSLKARCKK ALNLINGPEM
0801: YLRRSCFHHS PPPAPLVSMT SDGPKSGKKR REIRAKLAKE LASGEDESGN KRGPKRGRED KPADVDEPLI KKAASTIAVE AADSKPKTTD SYLSKTRFDQ
0901: FPLSPLSLKG IQDAGFKTMT VVQEATLPII LKGKDVLAKA KTGTGKTVAF LLPSIEAVIK SPPVSRDNRH PPIIVLVVCP TRELACQAAA EANILLKYHS
1001: SIGVEVVIGG TKLPAEQRRM QKHPCQILVA TPGRLIDHID NTSGFATRLK GVKVLVLDEA DHLLDMGFRR DIERIIAAVP KQRQTFLFSA TVPEEVRQIC
1101: HIALKQDHEF VNCVQEGSGE THQKVSQMYM IATLDRHFSL IYALLKKHIA DNVGYKVIIF CTTAMVTRLV ADLLGQLSLN VREIHSRKPQ SYRTRVSDEF
1201: RKSKSIILVT SDVSARGVDY PDVSLVVQMG LPSDREQYIH RLGRTGRKGK EGEGVLLLAP WEEYFLSSVK DLPIAKSPLP PIDHEAVKKV QKALSQVEMT
1301: HKEAAYQAWL GYYKSQKKIA RDTTRLVELA NEFSRSMGLD TPPAIPINVI GKMGLKNVPG LRVAPGIDKR QGKKNYRSR

Best Arabidopsis Sequence Match ( AT5G08620.1 )
(BLAST)

001: MNSDGPKSGK KRREIRAKLV KKLTSDEDGS GKLVKDNNKS LKRGREGKSD VDEPLIKKPA STTPLVTQIA KTSDSYLSKT RFDQFPLSPL TLKGIEDAGF
101: KTMTVVQEAT LPLILQGKDI LAKAKTGTGK TVAFLLPSIE AVIKAPPASR DNRHPPIIVL VVCPTRELAC QAAAEANILL KYHPSIGVQV VIGGTKLPTE
201: QRRLQKSPCQ ILVATPGRLK DHIDNTSGFA TRLMGVKVLV LDEADHLLDM GFRREIERII AAVPKQRQTF LFSATVSDEV RQICHVALKR DHEFVNCVQE
301: GAGETHQKVS QMYMIASLDR HFSLLYGLLK KHITDNVGYK VIIFCTTAMV TRLVADLLGK LSLNVREIHS RKPQSYRTRV SDEFRKSKSI ILVTSDVSAR
401: GVDYPDVSLV VQMGLPSDRE QYIHRLGRTG RKGKEGEGVL LLAPWEEYFL SSVKDLPITK SSLPPIDHEA VKKVQKGLIQ VEMTNKEAAY QAWLGYYKSQ
501: KKIARDTTRL VELANEFSRS MGLSIPPAIP VNILGKMGLK NVPGIRVAPG FDKKPAKRNY RSR

Arabidopsis Description

RH25DEAD-box ATP-dependent RNA helicase 25 [Source:UniProtKB/Swiss-Prot;Acc:Q94C75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.