Factsheet for Os01t0618400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044208_P001	Maize	plastid	82.66	83.79
EES01082	Sorghum	mitochondrion, plastid	82.32	83.16
TraesCS3A01G222700.1	Wheat	mitochondrion	80.64	81.46
TraesCS3D01G230400.2	Wheat	mitochondrion	80.3	81.12
TraesCS3B01G252600.1	Wheat	plastid	79.8	81.03
Os01t0618500-01	Rice	nucleus	72.56	80.41
Bra009356.1-P	Field mustard	cytosol	56.4	59.71
Bra028652.1-P	Field mustard	nucleus	54.38	59.7
CDY40740	Canola	cytosol	54.21	59.52
AT5G08620.1	Thale cress	nucleus	55.56	58.61
CDY44780	Canola	mitochondrion	55.56	57.09
GSMUA_Achr8P04210_001	Banana	cytosol	68.52	55.0
KRH47920	Soybean	nucleus	62.63	52.92
AT5G63630.2	Thale cress	mitochondrion, plastid	61.95	51.4
CDX84428	Canola	mitochondrion	60.77	51.06
CDY41525	Canola	mitochondrion	60.77	50.77
VIT_15s0046g01010.t01	Wine grape	plastid	63.8	49.28
Bra038650.1-P	Field mustard	mitochondrion	60.77	48.59
Bra009355.1-P	Field mustard	mitochondrion, plastid	61.28	47.77
KRH06491	Soybean	nucleus	62.63	46.15
AT5G08610.1	Thale cress	mitochondrion, plastid	61.62	43.06
Solyc01g095740.2.1	Tomato	nucleus	61.11	41.72
PGSC0003DMT400000611	Potato	mitochondrion	60.77	41.45
Os06t0526600-01	Rice	mitochondrion	57.74	37.16
Os02t0826100-01	Rice	cytosol	46.63	34.16
Os07t0660000-00	Rice	cytosol	21.89	29.21
Os03t0802700-01	Rice	nucleus	26.94	27.12
Os07t0633500-00	Rice	nucleus	18.35	27.05
Os06t0535100-00	Rice	nucleus	26.26	26.8
Os03t0669000-01	Rice	cytosol, nucleus, plastid	21.21	26.69
CDY21554	Canola	mitochondrion	60.61	26.49
CDX69935	Canola	mitochondrion	60.94	26.25
Os05t0110500-02	Rice	nucleus	23.4	23.52
Os01t0164500-01	Rice	plastid	23.91	21.95
Os04t0510400-01	Rice	nucleus	25.42	18.15
Os12t0481100-01	Rice	nucleus	23.91	17.71
Os08t0416100-01	Rice	nucleus	21.04	14.69
Os07t0517000-01	Rice	nucleus	12.29	13.93

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4326614	EMBL:AK067570	ProteinID:BAD61515.1	ProteinID:BAF05504.1
ProteinID:BAS73190.1	InterPro:DEAD/DEAH_box_helicase_dom	ProteinID:EEE54997.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlantsGene:Os01g0618400
EnsemblPlants:Os01t0618400-01	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF275	UniProt:Q5ZBH5	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00004505B3	RefSeq:XP_015621602.1
SEG:seg	:	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 25, RNA helicase 25Similar to RNA helicase (Fragment). (Os01t0618400-01)

Coordinates

chr1:+:24598181..24601809

Molecular Weight (calculated)

65638.7 Da

IEP (calculated)

10.172

GRAVY (calculated)

-0.265

Length

594 amino acids

Sequence
(BLAST)

001: MAAGDLLLRT QSGLPVLARA FPSCLCLRVP ARRRRGAPPL TAAKVDVADA VGRRVRSGGA AVPKRRRSRR DAEEEEEEGL AFSRVVTGRG RGVREEGVAE
101: GEAPEFDAAK SGDESGGVDG SYLSDTRFDQ CTISPLSLKA VKDAGYERMT QVQEATLPVI LQGKDVLAKA KTGTGKTVAF LLPAIEVLSA LPNSRRDQLR
201: PSINLLVMCP TRELAIQVAV EAKKLLKYHR SLGVQVVIGG TRLTQEQRSM QANPCQILVA TPGRLKDHVE NTPGFSTRLK GVKVLVLDEA DRLLDMGFRR
301: DIERIIASVP KERQTLLFSA TVPEEVRQIS HIAMKKNYKF INTVKDGDEE THAQVSQMFM IAPLDLHFSI LYDVLKKHVA EDADYKVIIF CTTAMVTKLV
401: AEILSQLRLN IREIHSRKSQ SARTKVSDEF RKSRGLILVS SDVSARGVDY PDVTLVIQVG VPADRQQYIH RLGRTGRKGK EGQGLLLLAP WEKYFLSSIK
501: DLSISEATVP SVDSSTQTIV KDAVRKVEMR SKECAYQAWL GYYNSNKTIG REKSRLVKLA EEFSQSMELS VPPAIPKQIL RKMGLNNVPG LRST

Best Arabidopsis Sequence Match ( AT5G63630.1 )
(BLAST)

001: MGDIGDLLSE DDEEEDQDYD FLKKKAVSAF GFDKENVIEA DKTRNANDSY LTKTRFDHYP LSPLSLKAIK DAGYETMTVV QEATLPIILK GKDVLAKAKT
101: GTGKTVAFLL PSIEVVVKSP PTSPDNKRPP ILALVICPTR ELANQAATEA NTLLKYHPSI GVQVVIGGTR LGLEQKRMQT NPCQILVATP GRLKDHIENT
201: PGFATRLKGV KVLVLDEADH LLDMGFRKDI ERIISAVPKE RQTFLFSATV PEEVRQICLV ALRRDHEFVN CVHEGTIETH QQVRQMHMIA SLDRHFSLLY
301: TLLREHIMGN VDYKVIVFCT TAMVTKLVAD LLGELNLNVR EIHSRKPQSY RTRVSNEFRK SKGLILVTSD VSARGVDYPD VTLVLQVGLP KDREQYIHRL
401: GRTGRKGKEG EGILLLAPWE EYFLSSLKDL PITKSPLPSI DPETVKKVQK ALCHVEMRNK EAAYQAWLGY YNSQKMIGRD KDRLVELANE FSRSMGLDNP
501: PAIPKLILGK MGLKNVPGLR AK

Arabidopsis Description

RH31DEAD-box ATP-dependent RNA helicase 31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFQ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.