Factsheet for Os03t0669000-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G128700.1	Wheat	nucleus	77.54	79.91
TraesCS2D01G131200.1	Wheat	nucleus	77.54	79.91
TraesCS6A01G114900.1	Wheat	nucleus	75.64	78.12
OQU93356	Sorghum	cytosol	74.15	77.09
TraesCS6D01G103400.1	Wheat	nucleus	72.03	76.58
Zm00001d048477_P001	Maize	plastid	30.08	75.94
TraesCS6B01G142500.1	Wheat	mitochondrion, nucleus	76.27	75.0
Os07t0660000-00	Rice	cytosol	69.92	74.16
Zm00001d014787_P001	Maize	nucleus	72.88	73.98
TraesCS2B01G150800.1	Wheat	mitochondrion	77.75	71.12
HORVU2Hr1G022490.2	Barley	nucleus	69.92	66.94
VIT_01s0010g01890.t01	Wine grape	nucleus	56.99	65.45
Solyc10g007550.2.1	Tomato	cytosol, nucleus	60.17	64.69
KRH65120	Soybean	cytosol	58.69	63.1
HORVU6Hr1G020570.1	Barley	plastid	75.64	63.07
CDY42845	Canola	cytosol	58.9	61.92
CDY47007	Canola	cytosol	58.69	61.69
Bra029342.1-P	Field mustard	cytosol	58.69	61.28
KRH48210	Soybean	nucleus	41.53	61.25
AT5G60990.1	Thale cress	nucleus	59.11	61.18
VIT_11s0065g01090.t01	Wine grape	cytosol	61.86	54.17
GSMUA_Achr8P34380_001	Banana	cytosol	64.19	41.68
Os07t0633500-00	Rice	nucleus	31.14	36.48
Os03t0802700-01	Rice	nucleus	30.3	24.24
Os05t0110500-02	Rice	nucleus	29.45	23.52
Os01t0618500-01	Rice	nucleus	26.48	23.32
Os06t0535100-00	Rice	nucleus	28.6	23.2
Os01t0164500-01	Rice	plastid	29.66	21.64
Os01t0618400-01	Rice	nucleus, plasma membrane	26.69	21.21
Os12t0481100-01	Rice	nucleus	32.63	19.2
Os04t0510400-01	Rice	nucleus	28.39	16.11
Os02t0826100-01	Rice	cytosol	25.85	15.04
Os08t0416100-01	Rice	nucleus	27.12	15.04
Os07t0517000-01	Rice	nucleus	13.77	12.4
Os06t0526600-01	Rice	mitochondrion	23.73	12.13

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4333678	ProteinID:AAP44655.1	ProteinID:AAU89137.1	ProteinID:ABF98097.1
EMBL:AK067769	ProteinID:BAF12775.1	ProteinID:BAS85665.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	ProteinID:EAZ28064.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlantsGene:Os03g0669000	EnsemblPlants:Os03t0669000-01	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF78	UniProt:Q7Y183	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000019C5E5	RefSeq:XP_015627999.1	SEG:seg	:

Description

THERMOTOLERANT GROWTH REQUIRED1DEAD-box RNA helicase, Regulation of thermotolerant growth, rRNA homeostasis at high temperature (Os03t0669000-01);Similar to cDNA clone:J013120J20, full insert sequence. (Os03t0669000-02)

Coordinates

chr3:-:26380709..26385454

Molecular Weight (calculated)

52482.6 Da

IEP (calculated)

8.846

GRAVY (calculated)

-0.275

Length

472 amino acids

Sequence
(BLAST)

001: MAKKKDVEVE ELDEEVVAAA AAPAADGGEE QEAEPPARRP STFAELGVVP ELVAACDAMG WKEPTRIQAE AIPHALEGRD LIGLGQTGSG KTGAFALPII
101: QALLKQDKPQ ALFACVLSPT RELAFQIGQQ FEALGSAIGL SCTVLVGGVD RVQQAVSLAK RPHIVVGTPG RLLDHLTDTK GFSLNKLKYL VLDEADKLLN
201: VEFQKALDDI LNVIPKERRT FLFSATMTNK VSKLQRACLR NPVKVEVASK YSTVDTLRQE FYFVPADYKD CFLVHVLNEL PGSMIMIFVR TCESTRLLAL
301: TLRNLRFKAI SISGQMSQDK RLGALNRFKT KDCNILICTD VASRGLDIQG VDVVINYDIP MNSKDYVHRV GRTARAGNTG YAVSLVNQYE AMWFKMIEKL
401: LGYEIPDRKV DNAEIMILRE RISDSKRIAL TTMKEGGGHK KKRRKNEDDE EEEERNAPVS RKSKSFNKSR RR

Best Arabidopsis Sequence Match ( AT5G60990.1 )
(BLAST)

001: MEEENEVVKT FAELGVREEL VKACERLGWK NPSKIQAEAL PFALEGKDVI GLAQTGSGKT GAFAIPILQA LLEYVYDSEP KKGRRPDPAF FACVLSPTRE
101: LAIQIAEQFE ALGADISLRC AVLVGGIDRM QQTIALGKRP HVIVATPGRL WDHMSDTKGF SLKSLKYLVL DEADRLLNED FEKSLNQILE EIPLERKTFL
201: FSATMTKKVR KLQRACLRNP VKIEAASKYS TVDTLKQQYR FVAAKYKDCY LVYILSEMPE STSMIFTRTC DGTRFLALVL RSLGFRAIPI SGQMTQSKRL
301: GALNKFKAGE CNILVCTDVA SRGLDIPSVD VVINYDIPTN SKDYIHRVGR TARAGRSGVG ISLVNQYELE WYIQIEKLIG KKLPEYPAEE DEVLSLLERV
401: AEAKKLSAMN MKESGGRKRR GEDDEESERF LGGNKDRGNK ERGGNKDKKS SKKFKR

Arabidopsis Description

RH10DEAD-box ATP-dependent RNA helicase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.