Factsheet for HORVU2Hr1G022490.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G128700.1	Wheat	nucleus	79.92	86.03
TraesCS2D01G131200.1	Wheat	nucleus	79.51	85.59
Zm00001d048477_P001	Maize	plastid	29.01	76.47
TraesCS2B01G150800.1	Wheat	mitochondrion	79.51	75.97
OQU93356	Sorghum	cytosol	65.52	71.15
Os03t0669000-01	Rice	cytosol, nucleus, plastid	66.94	69.92
Zm00001d014787_P001	Maize	nucleus	64.71	68.6
Os07t0660000-00	Rice	cytosol	60.45	66.97
HORVU6Hr1G020570.1	Barley	plastid	72.82	63.43
KRH48210	Soybean	nucleus	40.37	62.19
VIT_01s0010g01890.t01	Wine grape	nucleus	50.91	61.07
KRH65120	Soybean	cytosol	54.16	60.82
Solyc10g007550.2.1	Tomato	cytosol, nucleus	53.96	60.59
CDY42845	Canola	cytosol	53.14	58.35
CDY47007	Canola	cytosol	53.14	58.35
Bra029342.1-P	Field mustard	cytosol	53.14	57.96
AT5G60990.1	Thale cress	nucleus	52.94	57.24
VIT_11s0065g01090.t01	Wine grape	cytosol	55.17	50.46
GSMUA_Achr8P34380_001	Banana	cytosol	57.2	38.79
HORVU2Hr1G028120.2	Barley	plastid	24.75	24.55
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	23.94	23.74
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	24.14	22.12
HORVU5Hr1G010160.3	Barley	cytosol	25.15	20.6
HORVU1Hr1G004510.5	Barley	plastid	24.54	18.33
HORVU3Hr1G018130.7	Barley	plastid	24.95	18.17
HORVU5Hr1G093160.3	Barley	nucleus	26.98	16.0
HORVU4Hr1G083970.6	Barley	nucleus	26.77	15.12
HORVU6Hr1G093300.7	Barley	cytosol, nucleus	21.7	14.08
HORVU2Hr1G088480.2	Barley	nucleus, plastid	24.34	13.82

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287HCG8	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
EnsemblPlantsGene:HORVU2Hr1G022490	EnsemblPlants:HORVU2Hr1G022490.2	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR24031	PANTHER:PTHR24031:SF78	InterPro:RNA-helicase_DEAD-box_CS	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI000B46CE82	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:+:65411160..65416152

Molecular Weight (calculated)

48164.5 Da

IEP (calculated)

9.709

GRAVY (calculated)

-0.222

Length

493 amino acids

Sequence
(BLAST)

001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXAIPHALQ GTTGGAAGRL CVQLWWSRVV DSGFGFLGAG
101: RDVIGLGQTG SGKTGAFALP IIQALLEHRQ PFFACVMSPT RELAIQIAEQ FEALGSGIGL VCSVLVGGVD RMQQVLSIAK RPHIVVGTPG RLLDHLKDTK
201: GFSLTKVKYL VLDEADKLLN LEFKESLDDI LKEIPKERRT YLFSATMTKK VSKLQRACLR NPVKVEVSSK YSTVDTLKQE WYFVPADYKD CYLVHVLNEL
301: QGSMIMIFVR TCESTRLLAL TLRNLGFKAL SISGQMSQDK RLGALNKFKA KDFNILICTD VASRGLDIQG VDVVMNYDIP MNSKDYVHRV GRTARAGQSG
401: YAVSFVNQYE AEWFKLIEQL LGRQIPDRKV DMDEILILRE HISDSKRIAL TKLKEDGGHK KRRKAAEDED DEEEEAPRGH RQKSRSFKKS SRR

Best Arabidopsis Sequence Match ( AT1G16280.1 )
(BLAST)

001: MEEPTPEEEG GITIMSKSRK NPKTVVNIQS QKLDSDQNTP QFEKFTNPNP SSDTTSATNF EGLGLAEWAV ETCKELGMRK PTPVQTHCVP KILAGRDVLG
101: LAQTGSGKTA AFALPILHRL AEDPYGVFAL VVTPTRELAF QLAEQFKALG SCLNLRCSVI VGGMDMLTQT MSLVSRPHIV ITTPGRIKVL LENNPDVPPV
201: FSRTKFLVLD EADRVLDVGF QDELRTIFQC LPKSRQTLLF SATMTSNLQA LLEHSSNKAY FYEAYEGLKT VDTLTQQFIF EDKDAKELYL VHILSQMEDK
301: GIRSAMIFVS TCRTCQRLSL MLDELEVENI AMHSLNSQSM RLSALSKFKS GKVPILLATD VASRGLDIPT VDLVINYDIP RDPRDYVHRV GRTARAGRGG
401: LAVSIITETD VKLIHKIEEE VGKKMEPYNK KVITDSLEVT KVSKAKRVAM MKMLDNGFED KVKDRRKLKR KTLADKGLLK KRGKRQKSTE N

Arabidopsis Description

RH36DEAD-box ATP-dependent RNA helicase 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.