Factsheet for Zm00001d014787_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU93356	Sorghum	cytosol	93.33	95.59
Zm00001d048477_P001	Maize	plastid	37.42	93.05
TraesCS2D01G131200.1	Wheat	nucleus	75.91	77.07
TraesCS2A01G128700.1	Wheat	nucleus	75.48	76.64
TraesCS6A01G114900.1	Wheat	nucleus	72.26	73.52
TraesCS6D01G103400.1	Wheat	nucleus	69.68	72.97
Os03t0669000-01	Rice	cytosol, nucleus, plastid	73.98	72.88
TraesCS6B01G142500.1	Wheat	mitochondrion, nucleus	72.9	70.62
TraesCS2B01G150800.1	Wheat	mitochondrion	76.13	68.6
Os07t0660000-00	Rice	cytosol	64.09	66.97
Solyc10g007550.2.1	Tomato	cytosol, nucleus	62.37	66.06
VIT_01s0010g01890.t01	Wine grape	nucleus	58.06	65.69
HORVU2Hr1G022490.2	Barley	nucleus	68.6	64.71
KRH65120	Soybean	cytosol	60.86	64.46
CDY42845	Canola	cytosol	60.65	62.81
CDY47007	Canola	cytosol	60.43	62.58
Bra029342.1-P	Field mustard	cytosol	60.43	62.17
KRH48210	Soybean	nucleus	42.37	61.56
AT5G60990.1	Thale cress	nucleus	60.0	61.18
HORVU6Hr1G020570.1	Barley	plastid	73.33	60.25
VIT_11s0065g01090.t01	Wine grape	cytosol	62.8	54.17
GSMUA_Achr8P34380_001	Banana	cytosol	63.66	40.72
Zm00001d022246_P001	Maize	cytosol	38.06	34.04
Zm00001d027279_P001	Maize	nucleus	18.92	30.88
Zm00001d024719_P001	Maize	nucleus	21.51	29.59
Zm00001d000431_P001	Maize	plastid	28.6	27.37
Zm00001d041799_P001	Maize	cytosol	13.76	24.24
Zm00001d044203_P001	Maize	plasma membrane	27.96	23.21
Zm00001d010225_P001	Maize	plasma membrane	25.38	22.96
Zm00001d044208_P001	Maize	plastid	27.96	22.18
Zm00001d023501_P001	Maize	nucleus	28.6	22.06
Zm00001d013056_P001	Maize	nucleus	30.75	21.8
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	15.27	19.61
Zm00001d006113_P001	Maize	nucleus	32.47	19.14
Zm00001d021127_P001	Maize	nucleus, plasma membrane	31.61	19.09
Zm00001d039746_P001	Maize	nucleus	29.46	18.9
Zm00001d050315_P001	Maize	nucleus	29.89	16.55
Zm00001d003031_P002	Maize	nucleus	29.46	16.19
Zm00001d006497_P002	Maize	nucleus	25.81	16.04
Zm00001d018516_P002	Maize	mitochondrion	27.74	15.77
Zm00001d032317_P001	Maize	nucleus	14.19	13.5
Zm00001d046097_P001	Maize	mitochondrion	26.24	13.03

Protein Annotations

EntrezGene:100193011	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6GWC4	ProteinID:AQK67183.1	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF78	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0008446942	EnsemblPlantsGene:Zm00001d014787	EnsemblPlants:Zm00001d014787_P001
EnsemblPlants:Zm00001d014787_T001	SEG:seg	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 10

Coordinates

chr5:-:63034224..63040734

Molecular Weight (calculated)

51536.4 Da

IEP (calculated)

8.716

GRAVY (calculated)

-0.226

Length

465 amino acids

Sequence
(BLAST)

001: MANGDAAVEV GGNGEQEAAA RQASTFAELG ICAELVEACD AMGWKEPTRI QAEAIPHALQ GKDLIALAQT GSGKTGAFAL PILQELLSNR QAEQSFFACV
101: LSPTRELAIQ IAEQFEALGS AIGLRCSVLV GGVDRVQQVL SIGKRPHIVV GTPGRLLDHL TETKGFSLKK IKYLVLDEAD KLLNVEFEKS LDDILSEMPK
201: DRRTFLFSAT MTKKVNKLQR ACLRNPAKVE VSSKYSTVDS LKQEFYFVPA DDKDCYLLHV LNERLESMIM IFVRTCESTR LLALMLRNLG LKAMSISGQM
301: SQDKRLGALN RFKAKDCNIL ICTDVASRGL DIQGVDMVIN YDIPMNSKDY VHRVGRTARA GRSGYAVSLV NQYEAQWFVL IEQLLACLSY RLGFAGKKID
401: QCKVDRDEVL ILKGPISDAK RIALTKLKDS GGHKKRRNVG DDDEEVEDHS SHSRRPKSLK RSNRR

Best Arabidopsis Sequence Match ( AT5G60990.1 )
(BLAST)

001: MEEENEVVKT FAELGVREEL VKACERLGWK NPSKIQAEAL PFALEGKDVI GLAQTGSGKT GAFAIPILQA LLEYVYDSEP KKGRRPDPAF FACVLSPTRE
101: LAIQIAEQFE ALGADISLRC AVLVGGIDRM QQTIALGKRP HVIVATPGRL WDHMSDTKGF SLKSLKYLVL DEADRLLNED FEKSLNQILE EIPLERKTFL
201: FSATMTKKVR KLQRACLRNP VKIEAASKYS TVDTLKQQYR FVAAKYKDCY LVYILSEMPE STSMIFTRTC DGTRFLALVL RSLGFRAIPI SGQMTQSKRL
301: GALNKFKAGE CNILVCTDVA SRGLDIPSVD VVINYDIPTN SKDYIHRVGR TARAGRSGVG ISLVNQYELE WYIQIEKLIG KKLPEYPAEE DEVLSLLERV
401: AEAKKLSAMN MKESGGRKRR GEDDEESERF LGGNKDRGNK ERGGNKDKKS SKKFKR

Arabidopsis Description

RH10DEAD-box ATP-dependent RNA helicase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.