Factsheet for Zm00001d046097_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27297264
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU76491	Sorghum	nucleus	64.64	92.23
Os06t0526600-01	Rice	mitochondrion	70.09	71.07
TraesCS7D01G328100.1	Wheat	mitochondrion	70.62	68.93
TraesCS7A01G350700.1	Wheat	mitochondrion	70.51	68.18
TraesCS7B01G232200.1	Wheat	mitochondrion	70.3	67.91
GSMUA_Achr10P...	Banana	mitochondrion	52.88	65.39
Bra009356.1-P	Field mustard	cytosol	37.5	62.57
Bra028652.1-P	Field mustard	nucleus	35.79	61.92
AT5G08620.1	Thale cress	nucleus	37.07	61.63
CDY40740	Canola	cytosol	35.58	61.55
Zm00001d044208_P001	Maize	plastid	38.03	60.75
Zm00001d044203_P001	Maize	plasma membrane	35.58	59.46
KRH47920	Soybean	nucleus	44.66	59.46
CDY44780	Canola	mitochondrion	36.11	58.48
VIT_15s0046g01010.t01	Wine grape	plastid	47.12	57.35
AT5G63630.2	Thale cress	mitochondrion, plastid	43.7	57.12
CDX84428	Canola	mitochondrion	42.73	56.58
CDY41525	Canola	mitochondrion	42.73	56.26
KRH06491	Soybean	nucleus	47.12	54.71
Bra038650.1-P	Field mustard	mitochondrion	42.63	53.7
Bra009355.1-P	Field mustard	mitochondrion, plastid	43.27	53.15
Solyc01g095740.2.1	Tomato	nucleus	47.22	50.8
AT5G08610.1	Thale cress	mitochondrion, plastid	45.62	50.24
PGSC0003DMT400000611	Potato	mitochondrion	46.47	49.94
Zm00001d018516_P002	Maize	mitochondrion	32.91	37.65
Zm00001d000431_P001	Maize	plastid	16.24	31.28
Zm00001d027279_P001	Maize	nucleus	9.19	30.18
CDY21554	Canola	mitochondrion	42.52	29.29
CDX69935	Canola	mitochondrion	42.41	28.79
Zm00001d024719_P001	Maize	nucleus	10.26	28.4
Zm00001d014787_P001	Maize	nucleus	13.03	26.24
Zm00001d023501_P001	Maize	nucleus	16.88	26.2
Zm00001d022246_P001	Maize	cytosol	13.68	24.62
Zm00001d013056_P001	Maize	nucleus	17.09	24.39
Zm00001d041799_P001	Maize	cytosol	6.84	24.24
Zm00001d048477_P001	Maize	plastid	4.49	22.46
Zm00001d010225_P001	Maize	plasma membrane	12.18	22.18
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	7.91	20.44
Zm00001d039746_P001	Maize	nucleus	15.71	20.28
Zm00001d006497_P002	Maize	nucleus	15.06	18.85
Zm00001d006113_P001	Maize	nucleus	15.71	18.63
Zm00001d021127_P001	Maize	nucleus, plasma membrane	15.28	18.57
Zm00001d003031_P002	Maize	nucleus	16.24	17.97
Zm00001d050315_P001	Maize	nucleus	14.32	15.95
Zm00001d032317_P001	Maize	nucleus	6.62	12.68

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6P0V9	ProteinID:AQL03716.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF528	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0008430677	EnsemblPlantsGene:Zm00001d046097	EnsemblPlants:Zm00001d046097_P001	EnsemblPlants:Zm00001d046097_T001
SEG:seg	:	:	:	:	:

Description

Putative DEAD-box ATP-dependent RNA helicase family protein

Coordinates

chr9:-:63160737..63180393

Molecular Weight (calculated)

102264.0 Da

IEP (calculated)

8.445

GRAVY (calculated)

-0.636

Length

936 amino acids

Sequence
(BLAST)

001: MRRHHHLFVI LRRAVASSAS QRAQPLPLLH SVALRNGAAG SFSPCFFSSR ARSSVGAAKS LVEDEAELSD WISDLKTDSF HLGLSSGDEG DAPSTRRSSV
101: GSSRGGRGGS DSRGSFPRSS TAGGEFSGDR RGGFEQRGRM ISSGLDDADS GFGSSRGRRG RGERTSGFVR RGGRGNGFDE EATFRSPREQ RSQRGRASGV
201: ARRGGRYSDF DQDDGDTGFG SSRGRHGASG QLSVSSHRRG RVSDLDDDED SDDDLVGFGD LDGKQHHGRR KGGRENTVGL GRGRGRRDLG LSRKGGSYND
301: FGDYDDGRRR TSDLLQRTGR GSDLDDDEDD DAGPVGFDGY SVRQQGGRRG KMAKSVGPHR GGRGSDTDFG HRQPRGLKKI DFGLSEDDDE AGEVDEEDEP
401: SGFEDDLFED EGDKEDVGHI IGNKSGSSML PEDEPAKNES VQGRSAGGGD SYLSQKRFDE CPLSPLSLKG VKAAGYERMT AVQEATLPII LQVCSHLLAR
501: FLSTGKDVLA KAKTGTGKTV AFLLPAIEVV SKLPPVDRDL KKPPISVVVV CPTRELADQA AAEANKLLKF HPSIGVQLVI GGTRMALEQK RMHTNPCQIL
601: VATPGRLRDH MENTPGFATR LLGVKVLILD EADRLLDMGF RSDIEKIVAA LPKQRQTLLF SATVPDEVRQ VCHIAMKRDL EFVNTVQEGS EETHSQVKQM
701: HLIAPLDKQF SNLYGLLTDH ISENVDYKVI VFCTTAKVTS LVAELLSELK LNVREIHSRK PQSYRTRISK EFKESKGLIL VSSDVSARGV DYPNVTLVVQ
801: LGVPTDREQY IHRLGRTGRR GNEGTGILLL APWEEYFLRS INDLPITEAT QPLIDLDTKK KVDKALAHVE VKDKESAYQA WLGYYNSNKV IGRDKYQLVS
901: LANEFSRSMG LNNPPAVSKL ALRKMGLNNI PGLRSK

Best Arabidopsis Sequence Match ( AT5G63630.2 )
(BLAST)

001: MPLNFPLRIR FFAHSLSGTH LSYNTSSSVP LLFRIFSSGL NHFEFGSRIN FSTRPNRDQP EFERRIRDGG EIRASKSLIE DEEELSNWVS GFRTGSSRGI
101: LKSDDEDEED RSRGRNQEKR GIRNQVDSFR NKRYGGDRER GFNSRIQGKS SEASFRGRKE TSFSRDREDE KGLRKREDLR LEDESSDEDV KSLVMGDIGD
201: LLSEDDEEED QDYDFLKKKA VSAFGFDKEN VIEADKTRNA NDSYLTKTRF DHYPLSPLSL KAIKDAGYET MTVVQEATLP IILKGKDVLA KAKTGTGKTV
301: AFLLPSIEVV VKSPPTSPDN KRPPILALVI CPTRELANQA ATEANTLLKY HPSIGVQVVI GGTRLGLEQK RMQTNPCQIL VATPGRLKDH IENTPGFATR
401: LKGVKVLVLD EADHLLDMGF RKDIERIISA VPKERQTFLF SATVPEEVRQ ICLVALRRDH EFVNCVHEGT IETHQQVRQM HMIASLDRHF SLLYTLLREH
501: IMGNVDYKVI VFCTTAMVTK LVADLLGELN LNVREIHSRK PQSYRTRVSN EFRKSKGLIL VTSDVSARGV DYPDVTLVLQ VGLPKDREQY IHRLGRTGRK
601: GKEGEGILLL APWEEYFLSS LKDLPITKSP LPSIDPETVK KVQKALCHVE MRNKEAAYQA WLGYYNSQKM IGRDKDRLVE LANEFSRSMG LDNPPAIPKL
701: ILGKMGLKNV PGLRAK

Arabidopsis Description

RH31DEAD-box ATP-dependent RNA helicase 31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFQ1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.