CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046097_P001	Maize	mitochondrion	92.23	64.64
Bra009356.1-P	Field mustard	cytosol	53.35	62.39
AT5G08620.1	Thale cress	nucleus	52.74	61.46
Bra028652.1-P	Field mustard	nucleus	50.3	61.0
CDY40740	Canola	cytosol	50.3	61.0
EES03287	Sorghum	cytosol	52.13	60.96
EES01082	Sorghum	mitochondrion, plastid	53.2	59.35
GSMUA_Achr10P...	Banana	mitochondrion	68.14	59.05
CDY44780	Canola	mitochondrion	50.61	57.44
KRH47920	Soybean	nucleus	60.52	56.47
Os06t0526600-01	Rice	mitochondrion	79.42	56.45
TraesCS7D01G328100.1	Wheat	mitochondrion	81.86	56.0
TraesCS7B01G232200.1	Wheat	mitochondrion	82.47	55.83
TraesCS7A01G350700.1	Wheat	mitochondrion	81.86	55.48
AT5G63630.2	Thale cress	mitochondrion, plastid	58.23	53.35
CDX84428	Canola	mitochondrion	57.16	53.04
VIT_15s0046g01010.t01	Wine grape	plastid	62.04	52.93
CDY41525	Canola	mitochondrion	57.32	52.88
Bra038650.1-P	Field mustard	mitochondrion	57.16	50.47
KRH06491	Soybean	nucleus	61.59	50.12
Bra009355.1-P	Field mustard	mitochondrion, plastid	55.95	48.16
Solyc01g095740.2.1	Tomato	nucleus	61.28	46.21
PGSC0003DMT400000611	Potato	mitochondrion	60.52	45.58
AT5G08610.1	Thale cress	mitochondrion, plastid	58.08	44.82
EES07789	Sorghum	mitochondrion	46.04	36.7
KXG37786	Sorghum	nucleus	19.66	28.48
OQU93356	Sorghum	cytosol	18.75	27.09
CDY21554	Canola	mitochondrion	55.34	26.71
CDX69935	Canola	mitochondrion	55.49	26.4
KXG22990	Sorghum	cytosol	17.84	26.29
OQU76528	Sorghum	nucleus	23.63	25.88
EER90714	Sorghum	nucleus	23.78	25.04
EER99761	Sorghum	cytosol	18.9	24.7
EES00264	Sorghum	nucleus, plastid	21.8	22.2
EES18259	Sorghum	nucleus	19.82	21.67
EER99450	Sorghum	nucleus	22.1	19.46
KXG35997	Sorghum	nucleus	21.49	17.76
OQU81941	Sorghum	nucleus	21.04	16.39
OQU80427	Sorghum	nucleus	19.66	15.12

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1W0VTA8	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:OQU76491
ProteinID:OQU76491	ProteinID:OQU76491.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF528	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3010G153300	SUPFAM:SSF52540	UniParc:UPI0009DC88C2
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:44566748..44582052

Molecular Weight (calculated)

72340.3 Da

IEP (calculated)

8.527

GRAVY (calculated)

-0.537

Length

656 amino acids

Sequence
(BLAST)

001: MRRGRGRRDL GLSRKGGSYS DFGDCDGDIR LGSSRGRRDR GGRMSGLSQR RGRGSDLDDD EDDDAGPDGF EGSSVRHQGG RRGKMANGSH RGGRSSDMDF
101: GHRQPRGAKK FDFGLSEDDD EAGEVDEDDG PSGFEDDLFD DEVVKEDVGQ ITGNKSGSSM SAEDEPAKHE SVQGRRSTGG GDSYLSKKRF DECPLSPLSL
201: KGVKAAGYER MTAVQEATLP IILQGKDVLA KAKTGTGKTV AFLLPAIEVV SKLPPVDRDL KRPPISVVVV CPTRELADQA AAEANKLLKF HPSIGVQLVI
301: GGTRMALEQK RMHTNPCQIL VATPGRLRDH MENTPGFATR LMGVKVLILD EADRLLDMGF RSDIEKIVAA LPKQRQTLLF SATVPDEVRQ VCHIAMKRDL
401: EFVNTVQEGS EETHSQVKQM HLIAPLDKQF SILYGLLTDH ISENVDYKVI VFCTTAKVTS LVAELLSELK LNVREIHSRK PQSYRTRISK EFKESKGLIL
501: VSSDVSARGV DYPNVTLVVQ LGVPTDREQY IHRLGRTGRR GNEGAGVLLL APWEEYFLRS IKDLPISEAT QPLIDLDTKK KVDKALAHVE VKDKESAYQA
601: WLGYYNSNKF IGRDKYQLVS LANEFSRSMG LNNPPAVPKL ALRKMGLNNI PGLRSK

Best Arabidopsis Sequence Match ( AT5G63630.2 )
(BLAST)

001: MPLNFPLRIR FFAHSLSGTH LSYNTSSSVP LLFRIFSSGL NHFEFGSRIN FSTRPNRDQP EFERRIRDGG EIRASKSLIE DEEELSNWVS GFRTGSSRGI
101: LKSDDEDEED RSRGRNQEKR GIRNQVDSFR NKRYGGDRER GFNSRIQGKS SEASFRGRKE TSFSRDREDE KGLRKREDLR LEDESSDEDV KSLVMGDIGD
201: LLSEDDEEED QDYDFLKKKA VSAFGFDKEN VIEADKTRNA NDSYLTKTRF DHYPLSPLSL KAIKDAGYET MTVVQEATLP IILKGKDVLA KAKTGTGKTV
301: AFLLPSIEVV VKSPPTSPDN KRPPILALVI CPTRELANQA ATEANTLLKY HPSIGVQVVI GGTRLGLEQK RMQTNPCQIL VATPGRLKDH IENTPGFATR
401: LKGVKVLVLD EADHLLDMGF RKDIERIISA VPKERQTFLF SATVPEEVRQ ICLVALRRDH EFVNCVHEGT IETHQQVRQM HMIASLDRHF SLLYTLLREH
501: IMGNVDYKVI VFCTTAMVTK LVADLLGELN LNVREIHSRK PQSYRTRVSN EFRKSKGLIL VTSDVSARGV DYPDVTLVLQ VGLPKDREQY IHRLGRTGRK
601: GKEGEGILLL APWEEYFLSS LKDLPITKSP LPSIDPETVK KVQKALCHVE MRNKEAAYQA WLGYYNSQKM IGRDKDRLVE LANEFSRSMG LDNPPAIPKL
701: ILGKMGLKNV PGLRAK

Arabidopsis Description

RH31DEAD-box ATP-dependent RNA helicase 31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFQ1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.