Factsheet for VIT_15s0046g01010.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47920	Soybean	nucleus	64.5	70.55
Bra009356.1-P	Field mustard	cytosol	50.33	68.98
Bra028652.1-P	Field mustard	nucleus	47.85	68.02
Os01t0618500-01	Rice	nucleus	47.33	67.91
CDY40740	Canola	cytosol	47.72	67.84
AT5G08620.1	Thale cress	nucleus	49.15	67.14
EES03287	Sorghum	cytosol	48.11	65.95
CDY44780	Canola	mitochondrion	49.28	65.57
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	45.64	65.24
Zm00001d044203_P001	Maize	plasma membrane	46.94	64.46
TraesCS3A01G222500.1	Wheat	nucleus, plastid	44.99	64.31
TraesCS3B01G252700.2	Wheat	nucleus	39.79	64.15
TraesCS3D01G230300.1	Wheat	nucleus	44.86	64.13
Os01t0618400-01	Rice	nucleus, plasma membrane	49.28	63.8
Zm00001d044208_P001	Maize	plastid	48.5	63.65
CDX84428	Canola	mitochondrion	58.52	63.65
EES01082	Sorghum	mitochondrion, plastid	48.5	63.44
AT5G63630.2	Thale cress	mitochondrion, plastid	59.04	63.41
CDY41525	Canola	mitochondrion	58.52	63.29
TraesCS3A01G222700.1	Wheat	mitochondrion	48.37	63.27
TraesCS3D01G230400.2	Wheat	mitochondrion	48.37	63.27
KRH06491	Soybean	nucleus	66.19	63.15
TraesCS3B01G252600.1	Wheat	plastid	47.98	63.08
OQU76491	Sorghum	nucleus	52.93	62.04
Bra009355.1-P	Field mustard	mitochondrion, plastid	61.25	61.81
Bra038650.1-P	Field mustard	mitochondrion	58.52	60.57
GSMUA_Achr10P...	Banana	mitochondrion	58.13	59.05
VIT_06s0004g07260.t01	Wine grape	extracellular, vacuole	12.22	58.75
GSMUA_Achr8P04210_001	Banana	cytosol	55.4	57.57
Solyc01g095740.2.1	Tomato	nucleus	64.11	56.67
AT5G08610.1	Thale cress	mitochondrion, plastid	62.16	56.24
PGSC0003DMT400000611	Potato	mitochondrion	62.55	55.22
Zm00001d046097_P001	Maize	mitochondrion	57.35	47.12
Os06t0526600-01	Rice	mitochondrion	54.88	45.72
TraesCS7D01G328100.1	Wheat	mitochondrion	56.05	44.94
TraesCS7B01G232200.1	Wheat	mitochondrion	56.18	44.58
TraesCS7A01G350700.1	Wheat	mitochondrion	56.05	44.52
VIT_02s0025g03950.t01	Wine grape	mitochondrion	42.78	43.63
CDY21554	Canola	mitochondrion	60.34	34.14
CDX69935	Canola	mitochondrion	60.86	33.94
VIT_17s0000g04310.t01	Wine grape	cytosol	21.59	30.18
VIT_01s0010g01890.t01	Wine grape	nucleus	15.08	28.22
VIT_19s0085g00510.t01	Wine grape	cytosol	17.56	27.61
VIT_11s0065g01090.t01	Wine grape	cytosol	17.3	24.68
VIT_11s0016g00630.t01	Wine grape	nucleus	18.86	24.17
VIT_13s0067g01900.t01	Wine grape	nucleus	18.47	23.87
VIT_18s0001g14540.t01	Wine grape	nucleus	19.12	20.08
VIT_05s0049g02360.t01	Wine grape	nucleus	19.51	19.04

Protein Annotations

EntrezGene:100258444	wikigene:100258444	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB62515	ProteinID:CCB62515.1
InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6I6B9	EMBL:FN596755	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EntrezGene:LOC100258444	wikigene:LOC100258444	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF528	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGR:TC58669
UniParc:UPI000210AB6A	ArrayExpress:VIT_15s0046g01010	EnsemblPlantsGene:VIT_15s0046g01010	EnsemblPlants:VIT_15s0046g01010.t01	RefSeq:XP_002277120	RefSeq:XP_002277120.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr15:+:18075965..18081383

Molecular Weight (calculated)

85827.3 Da

IEP (calculated)

8.834

GRAVY (calculated)

-0.572

Length

769 amino acids

Sequence
(BLAST)

001: MPVKILPPFR FLNPCLPVSR FQSMNLKPAN QYSRTLPIFG RVFPFKLKYL GLAPPPSHHF GPRRLSTRSS RPRPSSTSGF RGEVKVSKSL MEDEAELSDW
101: VSGLKDDSFR TRFNDDDSEG ERGTGRSGRD SMKRTREIES DEFGDFNRRR GRSSAESFSR SSRKNGPNSV ARTRYESESG IEDDDDDDEM HSRKQIRSFR
201: GGNSTLSKRG GGGLRRGDRG PQKQAHLVSE GEDEDEDEEL KGSFKGLLSE EDSEEEEEED DDDDDHDEVL KKNASSLFGA AAKEAVPRSS TGKSDSYLSE
301: TRFDQCPISP LSLKAIKDAG YEKMTVVQEA TLPVILKGKD VLAKAKTGTG KTVAFLLPSI EILVKSPPIS RDQKRPPIVV LVICPTRELA SQAAAEANTL
401: LKYHPSLGVQ VVIGGTRLAL EQKRMQANPC QILVATPGRL KDHIENTAGF ATRLMGVKVL VLDEADHLLD MGFRKDIEKI IAAVPKQRQT LLFSATVPEE
501: VRQICHIALK RDHEFINTVQ EGSEETHSQV RQTHIIAPLD KHFLLLYALL KDHIADDVDY KVLVFCTTAM VTRLVADLLG ELNLNVREIH SRKPQGYRTR
601: VSDEFRKSKG LILVTSDVSA RGVDYPDVTL VIQVGLPSDK EQYIHRLGRT GRKGKEGQGI LLLAPWEEFF LSTAKDLPIT KAEAPLVDPD TRKKVERALS
701: QVEMKSKEAA YQAWLGYYNS NKKVGRDKVR LVELANEFSR TMGLDNPPAI PKLILGKMGL RNVPGLRSK

Best Arabidopsis Sequence Match ( AT5G63630.2 )
(BLAST)

001: MPLNFPLRIR FFAHSLSGTH LSYNTSSSVP LLFRIFSSGL NHFEFGSRIN FSTRPNRDQP EFERRIRDGG EIRASKSLIE DEEELSNWVS GFRTGSSRGI
101: LKSDDEDEED RSRGRNQEKR GIRNQVDSFR NKRYGGDRER GFNSRIQGKS SEASFRGRKE TSFSRDREDE KGLRKREDLR LEDESSDEDV KSLVMGDIGD
201: LLSEDDEEED QDYDFLKKKA VSAFGFDKEN VIEADKTRNA NDSYLTKTRF DHYPLSPLSL KAIKDAGYET MTVVQEATLP IILKGKDVLA KAKTGTGKTV
301: AFLLPSIEVV VKSPPTSPDN KRPPILALVI CPTRELANQA ATEANTLLKY HPSIGVQVVI GGTRLGLEQK RMQTNPCQIL VATPGRLKDH IENTPGFATR
401: LKGVKVLVLD EADHLLDMGF RKDIERIISA VPKERQTFLF SATVPEEVRQ ICLVALRRDH EFVNCVHEGT IETHQQVRQM HMIASLDRHF SLLYTLLREH
501: IMGNVDYKVI VFCTTAMVTK LVADLLGELN LNVREIHSRK PQSYRTRVSN EFRKSKGLIL VTSDVSARGV DYPDVTLVLQ VGLPKDREQY IHRLGRTGRK
601: GKEGEGILLL APWEEYFLSS LKDLPITKSP LPSIDPETVK KVQKALCHVE MRNKEAAYQA WLGYYNSQKM IGRDKDRLVE LANEFSRSMG LDNPPAIPKL
701: ILGKMGLKNV PGLRAK

Arabidopsis Description

RH31DEAD-box ATP-dependent RNA helicase 31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFQ1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.