Factsheet for TraesCS3A01G222700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G230400.2	Wheat	mitochondrion	98.64	98.64
TraesCS3B01G252600.1	Wheat	plastid	97.62	98.12
Os01t0618400-01	Rice	nucleus, plasma membrane	81.46	80.64
EES01082	Sorghum	mitochondrion, plastid	79.25	79.25
Zm00001d044208_P001	Maize	plastid	78.91	79.18
TraesCS3A01G222500.1	Wheat	nucleus, plastid	69.39	75.84
Bra009356.1-P	Field mustard	cytosol	55.44	58.11
Bra028652.1-P	Field mustard	nucleus	53.06	57.67
CDY40740	Canola	cytosol	52.89	57.49
AT5G08620.1	Thale cress	nucleus	54.93	57.37
CDY44780	Canola	mitochondrion	54.42	55.36
GSMUA_Achr8P04210_001	Banana	cytosol	67.01	53.24
KRH47920	Soybean	nucleus	62.93	52.63
CDX84428	Canola	mitochondrion	59.86	49.79
AT5G63630.2	Thale cress	mitochondrion, plastid	60.2	49.44
CDY41525	Canola	mitochondrion	59.69	49.37
VIT_15s0046g01010.t01	Wine grape	plastid	63.27	48.37
Bra038650.1-P	Field mustard	mitochondrion	59.69	47.24
Bra009355.1-P	Field mustard	mitochondrion, plastid	59.69	46.06
KRH06491	Soybean	nucleus	62.93	45.91
AT5G08610.1	Thale cress	mitochondrion, plastid	60.54	41.88
Solyc01g095740.2.1	Tomato	nucleus	60.37	40.8
PGSC0003DMT400000611	Potato	mitochondrion	60.03	40.53
TraesCS7A01G350700.1	Wheat	mitochondrion	59.18	35.95
TraesCS6A01G409100.1	Wheat	cytosol	46.09	30.59
TraesCS5A01G114200.1	Wheat	nucleus	27.38	27.76
TraesCS6A01G312900.1	Wheat	nucleus	26.02	27.67
TraesCS5A01G042300.1	Wheat	nucleus	26.53	27.08
TraesCS6A01G356000.1	Wheat	nucleus	25.85	26.53
TraesCS6A01G114900.1	Wheat	nucleus	20.58	26.48
TraesCS2A01G128700.1	Wheat	nucleus	20.58	26.42
CDY21554	Canola	mitochondrion	59.18	25.61
CDX69935	Canola	mitochondrion	59.35	25.31
TraesCS2A01G154800.1	Wheat	cytosol	21.09	24.31
TraesCS1A01G030500.1	Wheat	nucleus	23.81	22.88
TraesCS3A01G100100.1	Wheat	plastid	23.81	21.74
TraesCS7A01G313300.1	Wheat	nucleus	10.71	20.39
TraesCS2A01G222000.1	Wheat	mitochondrion, nucleus	23.98	18.58
TraesCS5A01G375900.1	Wheat	nucleus	21.94	16.58
TraesCS2A01G366700.1	Wheat	nucleus	22.79	15.88
TraesCS5A01G510500.1	Wheat	nucleus	21.09	14.55

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF275	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS3A01G222700	EnsemblPlants:TraesCS3A01G222700.1	TIGR:cd00079
TIGR:cd00268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:416301173..416304617

Molecular Weight (calculated)

64250.9 Da

IEP (calculated)

10.344

GRAVY (calculated)

-0.244

Length

588 amino acids

Sequence
(BLAST)

001: MAGGDILLRT HGGLPVLARA SPRSLRLRLT ASGRRAPSSL AAAKVDIGDV VSQLRSGSAR GAADPKRQRR VSEGRLAFPR VVTSRIRGAE EEGEGEAPQL
101: DAEKIGGEAG GVDGSYLSET RFDQCAISEL SLKGVKDAGY GRMTQVQEAT LPVILQGKDV LAKAKTGTGK TVAFLLPAIE VLSKLPSSQR SQLRSSINLL
201: VMCPTRELAN QVAVEAKKLL KYHRSLGVQV VIGGTRITQE QRNMQANPCQ ILVATPGRLK DHLENTPGFS TRLKGVKVLV LDEADRLLDM GFRRDIEKIM
301: AATPKDRQTL LFSATVPEEV CQISHVAMRK DYRFINTVKE GDEETHSQVS QMYMIAPLDL HFSILYDVLK KHVADDADYK VIIFCTTAMV TKLVAEVLSQ
401: LKLNIREIHS RKSQSARTKV SDEFRRSKGV ILVSSDVSAR GVDYPDVTLV IQVGIPAGRE QYIHRIGRTG RKGKEGQGLL LLAPWESHFL TSVKDLSVSE
501: AVTPSVDSST QTEVKGALRR VEMKSKESAY QAWLGYYNSN KTIGGNKSRL VTLGEEFSRS MGLAAPPAIP KLILRKMGLS KVPGFRST

Best Arabidopsis Sequence Match ( AT5G63630.1 )
(BLAST)

001: MGDIGDLLSE DDEEEDQDYD FLKKKAVSAF GFDKENVIEA DKTRNANDSY LTKTRFDHYP LSPLSLKAIK DAGYETMTVV QEATLPIILK GKDVLAKAKT
101: GTGKTVAFLL PSIEVVVKSP PTSPDNKRPP ILALVICPTR ELANQAATEA NTLLKYHPSI GVQVVIGGTR LGLEQKRMQT NPCQILVATP GRLKDHIENT
201: PGFATRLKGV KVLVLDEADH LLDMGFRKDI ERIISAVPKE RQTFLFSATV PEEVRQICLV ALRRDHEFVN CVHEGTIETH QQVRQMHMIA SLDRHFSLLY
301: TLLREHIMGN VDYKVIVFCT TAMVTKLVAD LLGELNLNVR EIHSRKPQSY RTRVSNEFRK SKGLILVTSD VSARGVDYPD VTLVLQVGLP KDREQYIHRL
401: GRTGRKGKEG EGILLLAPWE EYFLSSLKDL PITKSPLPSI DPETVKKVQK ALCHVEMRNK EAAYQAWLGY YNSQKMIGRD KDRLVELANE FSRSMGLDNP
501: PAIPKLILGK MGLKNVPGLR AK

Arabidopsis Description

RH31DEAD-box ATP-dependent RNA helicase 31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFQ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.