Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G384300.1 | Wheat | nucleus | 97.16 | 98.2 |
| TraesCS2D01G363700.1 | Wheat | nucleus | 97.04 | 97.97 |
| HORVU2Hr1G088480.2 | Barley | nucleus, plastid | 95.85 | 93.2 |
| Os04t0510400-01 | Rice | nucleus | 79.15 | 80.29 |
| OQU81941 | Sorghum | nucleus | 76.78 | 76.96 |
| Zm00001d003031_P002 | Maize | nucleus | 76.3 | 76.12 |
| VIT_05s0049g02360.t01 | Wine grape | nucleus | 56.4 | 60.41 |
| Bra021205.1-P | Field mustard | mitochondrion, nucleus, plastid | 44.79 | 60.1 |
| GSMUA_Achr5P10150_001 | Banana | nucleus | 54.38 | 59.61 |
| PGSC0003DMT400003801 | Potato | nucleus | 54.62 | 57.84 |
| Solyc09g090740.2.1 | Tomato | nucleus | 54.62 | 57.7 |
| KRH48208 | Soybean | nucleus | 53.44 | 55.68 |
| CDY52719 | Canola | nucleus, plastid | 50.24 | 51.15 |
| CDY34979 | Canola | nucleus, plastid | 50.36 | 51.08 |
| KRH65117 | Soybean | plastid | 49.53 | 50.73 |
| AT3G16840.2 | Thale cress | nucleus | 48.93 | 49.94 |
| TraesCS2A01G128700.1 | Wheat | nucleus | 15.76 | 29.04 |
| TraesCS6A01G114900.1 | Wheat | nucleus | 15.64 | 28.88 |
| TraesCS2A01G154800.1 | Wheat | cytosol | 17.3 | 28.63 |
| TraesCS3A01G222500.1 | Wheat | nucleus, plastid | 16.11 | 25.28 |
| TraesCS1A01G030500.1 | Wheat | nucleus | 16.71 | 23.04 |
| TraesCS3A01G222700.1 | Wheat | mitochondrion | 15.88 | 22.79 |
| TraesCS6A01G356000.1 | Wheat | nucleus | 14.81 | 21.82 |
| TraesCS5A01G375900.1 | Wheat | nucleus | 19.91 | 21.59 |
| TraesCS3A01G100100.1 | Wheat | plastid | 16.47 | 21.58 |
| TraesCS5A01G114200.1 | Wheat | nucleus | 14.69 | 21.38 |
| TraesCS6A01G312900.1 | Wheat | nucleus | 13.98 | 21.34 |
| TraesCS5A01G042300.1 | Wheat | nucleus | 14.46 | 21.18 |
| TraesCS2A01G222000.1 | Wheat | mitochondrion, nucleus | 15.88 | 17.65 |
| TraesCS5A01G510500.1 | Wheat | nucleus | 16.47 | 16.31 |
| TraesCS6A01G409100.1 | Wheat | cytosol | 17.06 | 16.25 |
| TraesCS7A01G350700.1 | Wheat | mitochondrion | 17.89 | 15.6 |
| TraesCS7A01G313300.1 | Wheat | nucleus | 5.69 | 15.53 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF91 | InterPro:RNA-helicase_DEAD-box_CS |
| InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS2A01G366700 | EnsemblPlants:TraesCS2A01G366700.1 |
| TIGR:cd00079 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2A:-:611038978..611044496
Molecular Weight (calculated)
94279.3 Da
IEP (calculated)
9.285
GRAVY (calculated)
-0.744
Length
844 amino acids
Sequence
(BLAST)
(BLAST)
001: MADAPEQPTP DPPTPPQEAI QRPKKNKKGR RKKPKKAAAA AAAPSSSGAT MVEDPFLVLA GGKEGGFLEL EEIDGADFGI FGSFVEDVGA SEKKAWNDQK
101: KKKKKKKRKR GDAKRLDGDV GGDGDGDGDC AGDLVAESEE EGEKGENKRK RKKRNKKKRK VKDNDSESKE DVADDNVEEY CCVLPDMQDD IENMEQDNKE
201: EVKLGEDELY AWLELRLHPL LIKAMHRLGF NEPTPIQKAC IPAGAHQGKD VIGAAETGSG KTLAFGLPIL QRLLEERDKT TRLHVEDEKV AEGSSTGGPL
301: RALILTPTRE LAKQVCDHLK EAAKFLGIHV VPIVGGLSME KQERLLKKKP EIVVGTPGRL WELMSSGNQH LVELHSLSFF VLDEADRMIE RGHFKEVQSI
401: IEMLPLSNSS DEQTVKATSS CETVANLQIK KRQTFVFSAT LALSANFRKK LKRGLSTSKA STADDLSSIE ELSKQAGMKP NAEIVDLTNA SILPEKLEES
501: FIECSDDDKD ANLYYILSVH GQGRTIVFCT SISALRHISS LLRTLGINVL TNHAQMQQRA RMKAVDRFRE GENSVLVATD GFARGMDFDN VRTVIHYQLP
601: HSSDVYIHRS GRTARKSLTG CSIALISPAD KAKFYSLCKS FSKENLQQFP VDQAYMPAIM NRLSLARQID KISSKSSKEN ANKSWLQRNA ESMGLILEAS
701: DSEEERVRGH KQRKATSAQL QKLQQDLNEL LQHPLQPKTF SRRYLAGAGI SPLLQKQLEE LSKRNVNSNS SNDNNKGSRF VIIGQDRVEP LQALQDSGQE
801: ICVNMDKQRE KRRLAENWRR KKHEEKKSTR EQKRKDRRSA KERD
101: KKKKKKKRKR GDAKRLDGDV GGDGDGDGDC AGDLVAESEE EGEKGENKRK RKKRNKKKRK VKDNDSESKE DVADDNVEEY CCVLPDMQDD IENMEQDNKE
201: EVKLGEDELY AWLELRLHPL LIKAMHRLGF NEPTPIQKAC IPAGAHQGKD VIGAAETGSG KTLAFGLPIL QRLLEERDKT TRLHVEDEKV AEGSSTGGPL
301: RALILTPTRE LAKQVCDHLK EAAKFLGIHV VPIVGGLSME KQERLLKKKP EIVVGTPGRL WELMSSGNQH LVELHSLSFF VLDEADRMIE RGHFKEVQSI
401: IEMLPLSNSS DEQTVKATSS CETVANLQIK KRQTFVFSAT LALSANFRKK LKRGLSTSKA STADDLSSIE ELSKQAGMKP NAEIVDLTNA SILPEKLEES
501: FIECSDDDKD ANLYYILSVH GQGRTIVFCT SISALRHISS LLRTLGINVL TNHAQMQQRA RMKAVDRFRE GENSVLVATD GFARGMDFDN VRTVIHYQLP
601: HSSDVYIHRS GRTARKSLTG CSIALISPAD KAKFYSLCKS FSKENLQQFP VDQAYMPAIM NRLSLARQID KISSKSSKEN ANKSWLQRNA ESMGLILEAS
701: DSEEERVRGH KQRKATSAQL QKLQQDLNEL LQHPLQPKTF SRRYLAGAGI SPLLQKQLEE LSKRNVNSNS SNDNNKGSRF VIIGQDRVEP LQALQDSGQE
801: ICVNMDKQRE KRRLAENWRR KKHEEKKSTR EQKRKDRRSA KERD
001: MVTGDKESSL MKKRNKRSHK RKREEDFERI DSLPWSSSIP IGEDDEGESF STLFSGSGQL DGGFLSLEEI DEADYHLTLP TIESEITERK QSPEDDDDTN
101: ETVDEMIEGE EAEEDGEGRD DEDDEDDEET RKKKEKKAKR NKEKKKEKKK KKQKKINEAA KNQDASAAVS CDGDDTVEEQ VEEEEIPPEF SAWSSMRLHP
201: LLMKSIYRLD FKEPTKIQKA CFNVAAYQGK DVIGAAETGS GKTLAFGLPI LQRLLDEREK VGKLYALKGE EAQKYAADGY LRALIITPTR ELALQVTEHL
301: ENAAKNLSVK VVPIVGGMFS EKQERRLKEK PEIVVATPGR LWELMSAGEK HLVELHSLSF FVLDEADRMV ERGHFRELQS ILDLLPVTDK PNEGKTQTVK
401: SNDTVLNVPK KKRQTFVFSA TIALSSDFRK KLKRGSSKSK QSSSGEVNSI EVLSERAGMR DNVAIIDLTT TSILAPKIEE SFIKCEEKEK DAYLYYILSV
501: HGQGRTIVFC TSVTDLRHIS GLLKILGLDV CTLFSEMKQR ARLKSIDRFR ASENGILIAT DLVARGIDIK NVRTIIHYKL PHSAEVYVHR CGRTARAFAD
601: GCSIALIEPN ETSKFYTLCK SFSMESVKIF PLDNSYMPAV RKRLYLARQI YEIERKGSRE NADRTWLKKH AESMELELDD EESEEERVDN VRQRKATSAR
701: LNKLKEELST LLSHPMQPKK FSGRYFAGVG VSTLMQNQFV ELKKQKQAQM QIGGDIKRRK LVVINQNCIE PLQALRAGGN EMLKMKGQSA EKRRDIASLK
801: KKRKEEKIGR RDQRRNQKKQ RKLMASS
101: ETVDEMIEGE EAEEDGEGRD DEDDEDDEET RKKKEKKAKR NKEKKKEKKK KKQKKINEAA KNQDASAAVS CDGDDTVEEQ VEEEEIPPEF SAWSSMRLHP
201: LLMKSIYRLD FKEPTKIQKA CFNVAAYQGK DVIGAAETGS GKTLAFGLPI LQRLLDEREK VGKLYALKGE EAQKYAADGY LRALIITPTR ELALQVTEHL
301: ENAAKNLSVK VVPIVGGMFS EKQERRLKEK PEIVVATPGR LWELMSAGEK HLVELHSLSF FVLDEADRMV ERGHFRELQS ILDLLPVTDK PNEGKTQTVK
401: SNDTVLNVPK KKRQTFVFSA TIALSSDFRK KLKRGSSKSK QSSSGEVNSI EVLSERAGMR DNVAIIDLTT TSILAPKIEE SFIKCEEKEK DAYLYYILSV
501: HGQGRTIVFC TSVTDLRHIS GLLKILGLDV CTLFSEMKQR ARLKSIDRFR ASENGILIAT DLVARGIDIK NVRTIIHYKL PHSAEVYVHR CGRTARAFAD
601: GCSIALIEPN ETSKFYTLCK SFSMESVKIF PLDNSYMPAV RKRLYLARQI YEIERKGSRE NADRTWLKKH AESMELELDD EESEEERVDN VRQRKATSAR
701: LNKLKEELST LLSHPMQPKK FSGRYFAGVG VSTLMQNQFV ELKKQKQAQM QIGGDIKRRK LVVINQNCIE PLQALRAGGN EMLKMKGQSA EKRRDIASLK
801: KKRKEEKIGR RDQRRNQKKQ RKLMASS
Arabidopsis Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VJW0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.