Factsheet for TraesCS6A01G356000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	82.72	95.37
TraesCS6A01G312900.1	Wheat	nucleus	76.61	79.39
TraesCS5A01G042300.1	Wheat	nucleus	78.36	77.95
OQU76528	Sorghum	nucleus	79.41	75.96
Zm00001d023501_P001	Maize	nucleus	77.84	73.96
TraesCS5A01G114200.1	Wheat	nucleus	69.63	68.79
GSMUA_Achr10P...	Banana	cytosol	60.21	66.73
Os06t0535100-00	Rice	nucleus	67.36	66.32
VIT_17s0000g04310.t01	Wine grape	cytosol	56.37	58.73
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	57.07	58.6
KRH62970	Soybean	nucleus	54.8	57.93
Solyc03g114370.2.1	Tomato	nucleus	56.89	57.6
PGSC0003DMT400063252	Potato	nucleus	56.2	56.89
KRH03838	Soybean	nucleus	57.07	56.87
KRH54795	Soybean	nucleus	54.1	56.67
KRH56711	Soybean	nucleus	56.54	56.64
TraesCS7A01G313300.1	Wheat	nucleus	30.37	56.31
CDY18530	Canola	nucleus	51.66	52.11
Bra037574.1-P	Field mustard	nucleus	51.31	51.94
Bra022336.1-P	Field mustard	nucleus	51.48	51.94
CDX95512	Canola	nucleus	51.66	51.93
CDX99342	Canola	nucleus	51.31	51.76
CDX82336	Canola	nucleus	51.66	51.66
CDX92251	Canola	nucleus	51.13	51.49
AT3G18600.1	Thale cress	nucleus	50.96	51.41
CDX75974	Canola	nucleus	51.83	51.03
CDY36514	Canola	nucleus	50.26	49.4
Bra001713.1-P	Field mustard	nucleus	52.01	49.17
Bra024428.1-P	Field mustard	nucleus	50.44	48.9
CDY08740	Canola	nucleus	50.44	48.65
AT5G65900.1	Thale cress	nucleus	49.56	44.87
TraesCS1A01G030500.1	Wheat	nucleus	30.72	28.76
TraesCS2A01G128700.1	Wheat	nucleus	22.86	28.6
TraesCS6A01G114900.1	Wheat	nucleus	22.51	28.23
TraesCS3A01G222500.1	Wheat	nucleus, plastid	26.0	27.7
TraesCS3A01G222700.1	Wheat	mitochondrion	26.53	25.85
TraesCS2A01G154800.1	Wheat	cytosol	22.34	25.1
TraesCS3A01G100100.1	Wheat	plastid	27.23	24.22
TraesCS2A01G222000.1	Wheat	mitochondrion, nucleus	30.89	23.32
TraesCS5A01G375900.1	Wheat	nucleus	25.13	18.51
TraesCS7A01G350700.1	Wheat	mitochondrion	28.8	17.05
TraesCS6A01G409100.1	Wheat	cytosol	25.83	16.7
TraesCS5A01G510500.1	Wheat	nucleus	24.26	16.31
TraesCS2A01G366700.1	Wheat	nucleus	21.82	14.81

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF305	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178
SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS6A01G356000	EnsemblPlants:TraesCS6A01G356000.1	TIGR:cd00079	TIGR:cd00268	SEG:seg

Description

No Description!

Coordinates

chr6A:-:586996003..586999511

Molecular Weight (calculated)

65391.5 Da

IEP (calculated)

8.499

GRAVY (calculated)

-0.553

Length

573 amino acids

Sequence
(BLAST)

001: MEGILQKHMA DAKEGSLPLP MSKRKRKEAV MDADDKKKEE EKDKKGKKEE EEEEEEEEEE EEEENQRQQE GGGILTCKLF SDLYMSDLTA KAIREMNYTH
101: LTQIQARSIP HLMVGHDVLG SARTGSGKTL AFLIPAIELL HNAHYTPRNG TGVIIVCPTR ELAIQTHNVA KELIKYHSQT IGYVIGGTNM KSEANQLVKG
201: INLLVATPGR LLDHLRSTSN FNYKRLQCLI IDEADRILEQ NFEDDMKQIF RRLPRDRQTV LFSATQTQKV EDFAKFTFGE NEERQRKLVY VGVDDSELKP
301: TVEGLQQGYC VIPSEKRFLV LYAFLKRMQT KQDVKVMVFF SSCSSVKFHA EFLNFLGIEC YDIHGQLKQQ KRTSTFFQFS KMNKGILLCT NVAARGLDIP
401: NVDYIVQYDP PDDPKDYIHR VGRTARGDKG KGRALLFLLP EEMKLLIYLQ VSKISLTEYA FSEKHVPKTQ SLLESIVGGN YFLNQSAKEA YRSYLLAYSS
501: HSMKDIFDVH QLDLKKVAAS FCFNNPPKVN LDLESSASRH RKMRKVEGGK RHGITPSNPY GRRGAHDGVQ FAR

Best Arabidopsis Sequence Match ( AT3G18600.1 )
(BLAST)

001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA

Arabidopsis Description

RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.