Factsheet for PGSC0003DMT400063252

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g114370.2.1	Tomato	nucleus	96.64	96.64
VIT_17s0000g04310.t01	Wine grape	cytosol	76.68	78.91
GSMUA_Achr10P...	Banana	cytosol	68.73	75.24
KRH03838	Soybean	nucleus	74.73	73.57
KRH62970	Soybean	nucleus	70.32	73.43
KRH56711	Soybean	nucleus	74.03	73.25
KRH54795	Soybean	nucleus	69.61	72.03
Bra022336.1-P	Field mustard	nucleus	66.61	66.37
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	65.19	66.13
CDX92251	Canola	nucleus	66.43	66.08
CDX82336	Canola	nucleus	66.78	65.97
AT3G18600.1	Thale cress	nucleus	66.08	65.85
CDX99342	Canola	nucleus	65.9	65.67
Bra037574.1-P	Field mustard	nucleus	65.55	65.55
CDY18530	Canola	nucleus	65.55	65.32
CDX95512	Canola	nucleus	65.55	65.09
CDX75974	Canola	nucleus	66.78	64.95
Bra001713.1-P	Field mustard	nucleus	66.78	62.38
TraesCS5A01G114200.1	Wheat	nucleus	62.9	61.38
TraesCS5D01G127000.1	Wheat	nucleus	62.9	61.38
TraesCS5B01G120400.1	Wheat	nucleus	62.72	61.21
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	53.36	60.76
Os03t0802700-01	Rice	nucleus	62.54	60.0
CDY36514	Canola	nucleus	61.13	59.35
Bra024428.1-P	Field mustard	nucleus	61.66	59.05
TraesCS6D01G292400.1	Wheat	nucleus	57.6	58.95
CDY08740	Canola	nucleus	61.66	58.75
EER90714	Sorghum	nucleus	64.13	58.27
TraesCS6A01G312900.1	Wheat	nucleus	56.89	58.23
TraesCS6B01G342900.1	Wheat	nucleus	55.48	57.51
TraesCS5A01G042300.1	Wheat	nucleus	58.3	57.29
Os06t0535100-00	Rice	nucleus	57.95	56.36
TraesCS6A01G356000.1	Wheat	nucleus	56.89	56.2
TraesCS5D01G050600.1	Wheat	nucleus	54.59	55.28
Zm00001d013056_P001	Maize	nucleus	63.6	54.88
OQU76528	Sorghum	nucleus	57.77	54.59
Zm00001d023501_P001	Maize	nucleus	57.6	54.06
AT5G65900.1	Thale cress	nucleus	60.07	53.71
HORVU5Hr1G010160.3	Barley	cytosol	57.07	53.65
Zm00001d000431_P001	Maize	plastid	45.94	53.5
KXG37786	Sorghum	nucleus	41.7	52.1
TraesCS7B01G213800.1	Wheat	nucleus	28.27	51.78
TraesCS7D01G309800.1	Wheat	nucleus	28.27	51.28
TraesCS7A01G313300.1	Wheat	nucleus	27.92	51.13
PGSC0003DMT400006153	Potato	nucleus	28.98	30.71
PGSC0003DMT400006154	Potato	nucleus	31.63	29.98
PGSC0003DMT400029241	Potato	cytosol	23.67	27.52
PGSC0003DMT400057202	Potato	nucleus	35.16	26.36
PGSC0003DMT400057606	Potato	nucleus	26.86	24.4
PGSC0003DMT400010896	Potato	cytosol, nucleus, plastid	28.09	19.73
PGSC0003DMT400000611	Potato	mitochondrion	29.86	19.4
PGSC0003DMT400025551	Potato	nucleus	25.44	19.33
PGSC0003DMT400003801	Potato	nucleus	23.67	16.81

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M1CAB9	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959
EnsemblPlantsGene:PGSC0003DMG400024601	PGSC:PGSC0003DMG400024601	EnsemblPlants:PGSC0003DMT400063252	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF305	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI0002953F97	SEG:seg	:

Description

Dead box ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400024601]

Coordinates

chr3:-:54362729..54370280

Molecular Weight (calculated)

64266.3 Da

IEP (calculated)

9.124

GRAVY (calculated)

-0.504

Length

566 amino acids

Sequence
(BLAST)

001: MAEVEENPNI VVAEEESIKK KRKRKRDRKN KMVTEKETKK EEENEEGEED DEERQELDDE LKEEIKKEMK SGSGIMSSEL FSSVEISDPT MKAIKDMGFE
101: YMTQIQARAI PPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFHVHFTPRN GTGVVVICPT RELAIQTHAV AKDLLKYHSQ TLGLVIGGSA RRAEAERIAK
201: GANLLVGTPG RLLDHLSNTK GFIYKNLKCL VIDEADRILE ANFEEDMQQI LKLLPKEGRQ TALFSATQTK KVEDLARLSL TAPIYIDVDD GRRRVTNEGL
301: QQGYCVVPSA RRFILLYSFL KRNLSKKIMV FFSSCNSVKF HSELLRYIKI ECHDIHGKQK QQKRTSTFFD FCDAKKGILL CTDVAARGLD IPAVDWIVQF
401: DPPDEPKEYI HRVGRTARGE GAKGNALLFL IPEELQFLKY LKAAKVPVKE YEFDHKKLAN VQSILEKLVA NNYYLNQSAK EAYRSYLLSY NSHSMKEIFN
501: VHRLDLQAVA SSFCFSNPPK VHLNIDSNAS KFRQKKRKVE GSRNGFSEGN PYGKKGADDT RQFVRY

Best Arabidopsis Sequence Match ( AT3G18600.1 )
(BLAST)

001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA

Arabidopsis Description

RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.