Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G213800.1 | Wheat | nucleus | 91.59 | 91.59 |
| TraesCS7D01G309800.1 | Wheat | nucleus | 90.61 | 89.74 |
| GSMUA_Achr10P... | Banana | cytosol | 57.93 | 34.62 |
| TraesCS5A01G114200.1 | Wheat | nucleus | 63.43 | 33.79 |
| TraesCS5A01G042300.1 | Wheat | nucleus | 58.58 | 31.42 |
| GSMUA_Achr7P07500_001 | Banana | cytosol, nucleus, peroxisome | 55.34 | 30.65 |
| TraesCS6A01G356000.1 | Wheat | nucleus | 56.31 | 30.37 |
| TraesCS6A01G312900.1 | Wheat | nucleus | 53.72 | 30.02 |
| KRH62970 | Soybean | nucleus | 52.43 | 29.89 |
| VIT_17s0000g04310.t01 | Wine grape | cytosol | 52.1 | 29.27 |
| KRH54795 | Soybean | nucleus | 50.81 | 28.7 |
| Solyc03g114370.2.1 | Tomato | nucleus | 51.46 | 28.09 |
| PGSC0003DMT400063252 | Potato | nucleus | 51.13 | 27.92 |
| KRH03838 | Soybean | nucleus | 51.13 | 27.48 |
| KRH56711 | Soybean | nucleus | 50.81 | 27.45 |
| Bra022336.1-P | Field mustard | nucleus | 45.63 | 24.82 |
| CDX99342 | Canola | nucleus | 45.63 | 24.82 |
| CDX92251 | Canola | nucleus | 45.63 | 24.78 |
| CDX82336 | Canola | nucleus | 45.63 | 24.61 |
| Bra037574.1-P | Field mustard | nucleus | 44.98 | 24.56 |
| CDY18530 | Canola | nucleus | 44.98 | 24.47 |
| CDX95512 | Canola | nucleus | 44.98 | 24.39 |
| CDX75974 | Canola | nucleus | 45.63 | 24.23 |
| AT3G18600.1 | Thale cress | nucleus | 44.01 | 23.94 |
| CDY36514 | Canola | nucleus | 44.34 | 23.5 |
| Bra024428.1-P | Field mustard | nucleus | 44.66 | 23.35 |
| Bra001713.1-P | Field mustard | nucleus | 45.63 | 23.27 |
| CDY08740 | Canola | nucleus | 44.66 | 23.23 |
| AT5G65900.1 | Thale cress | nucleus | 44.01 | 21.48 |
| TraesCS1A01G030500.1 | Wheat | nucleus | 27.51 | 13.89 |
| TraesCS3A01G222500.1 | Wheat | nucleus, plastid | 20.71 | 11.9 |
| TraesCS3A01G100100.1 | Wheat | plastid | 22.98 | 11.02 |
| TraesCS6A01G114900.1 | Wheat | nucleus | 15.86 | 10.72 |
| TraesCS3A01G222700.1 | Wheat | mitochondrion | 20.39 | 10.71 |
| TraesCS2A01G128700.1 | Wheat | nucleus | 15.86 | 10.7 |
| TraesCS2A01G222000.1 | Wheat | mitochondrion, nucleus | 25.89 | 10.54 |
| TraesCS2A01G154800.1 | Wheat | cytosol | 15.53 | 9.41 |
| TraesCS5A01G510500.1 | Wheat | nucleus | 20.06 | 7.28 |
| TraesCS7A01G350700.1 | Wheat | mitochondrion | 20.39 | 6.51 |
| TraesCS5A01G375900.1 | Wheat | nucleus | 16.18 | 6.43 |
| TraesCS6A01G409100.1 | Wheat | cytosol | 18.12 | 6.32 |
| TraesCS2A01G366700.1 | Wheat | nucleus | 15.53 | 5.69 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G313300.1 | EnsemblPlantsGene:TraesCS7A01G313300 | Gene3D:3.40.50.300 | InterPro:DUF4217 | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:P-loop_NTPase | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF305 | PFAM:PF00271 | PFAM:PF13959 | PFscan:PS51194 |
| SEG:seg | SMART:SM00490 | SMART:SM01178 | SUPFAM:SSF52540 | TIGR:cd00079 | MapMan:35.1 |
Description
No Description!
Coordinates
chr7A:+:445480264..445481860
Molecular Weight (calculated)
34807.4 Da
IEP (calculated)
7.979
GRAVY (calculated)
-0.464
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPAAASMGS AERSTESQQT VYGTAVTVEN GQEMQEPAEQ ETCRRQANLE GLQLGYSVVP SEKRFMVLHA FLKRKQSSKK VMVLFSSRSS VKFHAHLLNF
101: LQIECADIHE KQEQHDRTAT FSAFCTAEKG VLLCTNVAAR GLDLPDVDYI VQYDPPSDEP EDYIHHVGHT APGDKGKATV LLFLLPQELE FLISLRAANI
201: HLTEHQFNNK NVPNLQAHFE KIVGENYFLH QSAQQAYRSY ILAYNSHTMK DIFNVHGLSL KDVAASFCFR NPPKVDIGLE GRAMKKVGYN RGVDSRERRK
301: RRRISAADP
101: LQIECADIHE KQEQHDRTAT FSAFCTAEKG VLLCTNVAAR GLDLPDVDYI VQYDPPSDEP EDYIHHVGHT APGDKGKATV LLFLLPQELE FLISLRAANI
201: HLTEHQFNNK NVPNLQAHFE KIVGENYFLH QSAQQAYRSY ILAYNSHTMK DIFNVHGLSL KDVAASFCFR NPPKVDIGLE GRAMKKVGYN RGVDSRERRK
301: RRRISAADP
001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA
Arabidopsis Description
RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.