Factsheet for GSMUA_Achr7P07500_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	80.47	86.85
VIT_17s0000g04310.t01	Wine grape	cytosol	69.35	70.36
PGSC0003DMT400063252	Potato	nucleus	66.13	65.19
Solyc03g114370.2.1	Tomato	nucleus	65.59	64.66
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	56.27	63.18
KRH62970	Soybean	nucleus	61.29	63.1
KRH03838	Soybean	nucleus	64.16	62.26
TraesCS5A01G114200.1	Wheat	nucleus	64.7	62.24
TraesCS5B01G120400.1	Wheat	nucleus	64.34	61.9
KRH56711	Soybean	nucleus	63.44	61.89
TraesCS5D01G127000.1	Wheat	nucleus	64.16	61.72
KRH54795	Soybean	nucleus	59.86	61.06
Os03t0802700-01	Rice	nucleus	64.16	60.68
TraesCS6D01G292400.1	Wheat	nucleus	57.53	58.05
TraesCS6A01G312900.1	Wheat	nucleus	57.35	57.87
TraesCS6B01G342900.1	Wheat	nucleus	56.45	57.69
EER90714	Sorghum	nucleus	64.16	57.46
TraesCS6A01G356000.1	Wheat	nucleus	58.6	57.07
TraesCS5A01G042300.1	Wheat	nucleus	58.78	56.94
TraesCS7B01G213800.1	Wheat	nucleus	31.18	56.31
TraesCS7D01G309800.1	Wheat	nucleus	31.18	55.77
TraesCS7A01G313300.1	Wheat	nucleus	30.65	55.34
TraesCS5D01G050600.1	Wheat	nucleus	55.38	55.28
Bra022336.1-P	Field mustard	nucleus	56.09	55.11
CDX92251	Canola	nucleus	56.09	55.01
Bra037574.1-P	Field mustard	nucleus	55.73	54.95
Os06t0535100-00	Rice	nucleus	57.17	54.81
CDY18530	Canola	nucleus	55.73	54.75
CDX99342	Canola	nucleus	55.73	54.75
AT3G18600.1	Thale cress	nucleus	55.38	54.4
CDX82336	Canola	nucleus	55.56	54.1
CDX95512	Canola	nucleus	55.2	54.04
HORVU5Hr1G010160.3	Barley	cytosol	58.24	53.99
OQU76528	Sorghum	nucleus	57.89	53.92
CDX75974	Canola	nucleus	55.56	53.26
Zm00001d013056_P001	Maize	nucleus	62.54	53.2
Zm00001d023501_P001	Maize	nucleus	57.17	52.9
CDY36514	Canola	nucleus	54.66	52.32
Bra024428.1-P	Field mustard	nucleus	54.84	51.78
CDY08740	Canola	nucleus	54.84	51.52
Bra001713.1-P	Field mustard	nucleus	55.73	51.32
Zm00001d000431_P001	Maize	plastid	43.55	50.0
KXG37786	Sorghum	nucleus	39.25	48.34
AT5G65900.1	Thale cress	nucleus	53.76	47.39
GSMUA_Achr3P14380_001	Banana	cytosol	24.37	30.43
GSMUA_Achr7P18160_001	Banana	nucleus	30.65	29.28
GSMUA_Achr6P00390_001	Banana	cytosol, mitochondrion	33.33	25.34
GSMUA_Achr5P09910_001	Banana	nucleus	20.43	24.05
GSMUA_Achr8P01870_001	Banana	cytosol	27.24	23.35
GSMUA_Achr8P04210_001	Banana	cytosol	26.52	20.0
GSMUA_Achr8P34380_001	Banana	cytosol	25.63	19.67
GSMUA_Achr10P...	Banana	mitochondrion	26.34	19.42
GSMUA_Achr8P12970_001	Banana	nucleus	23.12	16.84
GSMUA_Achr9P14580_001	Banana	nucleus	23.3	15.83
GSMUA_Achr5P10150_001	Banana	nucleus	20.07	14.55

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr7G07500_001	EnsemblPlants:GSMUA_Achr7P07500_001	EnsemblPlants:GSMUA_Achr7T07500_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M0TFJ0	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF305	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI000294EEEF	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 27 [Source:GMGC_GENE;Acc:GSMUA_Achr7G07500_001]

Coordinates

chr7:+:5609695..5619508

Molecular Weight (calculated)

63268.0 Da

IEP (calculated)

9.645

GRAVY (calculated)

-0.206

Length

558 amino acids

Sequence
(BLAST)

001: MKAIQEMGFE NMTQIQARAI PPLLAGKEVM GAARTGSGKT LAFLIPAVEL LHNIHFMPRN GTGVIIICPT RELAIQTHAV AKDLLKYHSQ TLGLVIGGAG
101: RKGEAEHLAK GVNLLVATPG RLLDHLKNTK GFIYKNLMFL IIDEADRILE ANFEEDMKQI FKCLPKSKQL IKMLKIRLTV VHALDLYKSI LVLPHLRYEI
201: NRDAKIHDTW DTYLNLTDIG HYSGRVITPI VATNFSFSLA LEQRWWSLAR QTALFTATQT KQVEEFACLS FKEKPIYVGV DDGRSKVTVE GLQQGYCVVP
301: SNKRFLVLYA FLKRNLSKKI MVFFSSCNSV KYHSELLRYI QIDCFDIHGK QKQQKRTATF FDFCKAQKGI LLCTDVAARG LDIPAVDWIV QYDPPDEPKE
401: YIHRVGRTAR GEGSEGNALL FLLPEEVQFL LYLKEAKVPV KEYEFNEKKV PNLQSHLEKI VGENYFLSQS AKDAYKSYIL AYNSHSMKNV FNVHHLNLKD
501: VATSLCFVSP PKVNLDLESS ASKFRKKTHK IDGGHHGISA SNPYGRQKAD DQRQFARY

Best Arabidopsis Sequence Match ( AT3G18600.1 )
(BLAST)

001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA

Arabidopsis Description

RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.