Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024428.1-P | Field mustard | nucleus | 97.77 | 96.45 |
| CDY08740 | Canola | nucleus | 97.77 | 95.96 |
| AT5G65900.1 | Thale cress | nucleus | 81.13 | 74.72 |
| GSMUA_Achr10P... | Banana | cytosol | 55.23 | 62.28 |
| VIT_17s0000g04310.t01 | Wine grape | cytosol | 58.66 | 62.18 |
| PGSC0003DMT400063252 | Potato | nucleus | 59.35 | 61.13 |
| KRH62970 | Soybean | nucleus | 56.78 | 61.07 |
| CDY18530 | Canola | nucleus | 59.18 | 60.74 |
| CDX95512 | Canola | nucleus | 59.01 | 60.35 |
| CDX92251 | Canola | nucleus | 58.83 | 60.28 |
| CDX82336 | Canola | nucleus | 59.18 | 60.21 |
| CDX99342 | Canola | nucleus | 58.32 | 59.86 |
| Solyc03g114370.2.1 | Tomato | nucleus | 57.98 | 59.72 |
| KRH56711 | Soybean | nucleus | 58.49 | 59.62 |
| KRH54795 | Soybean | nucleus | 55.92 | 59.6 |
| KRH03838 | Soybean | nucleus | 58.66 | 59.48 |
| CDX75974 | Canola | nucleus | 59.18 | 59.28 |
| HORVU4Hr1G000640.1 | Barley | cytosol, nucleus | 46.83 | 54.93 |
| GSMUA_Achr7P07500_001 | Banana | cytosol, nucleus, peroxisome | 52.32 | 54.66 |
| TraesCS6D01G292400.1 | Wheat | nucleus | 50.77 | 53.53 |
| TraesCS5A01G114200.1 | Wheat | nucleus | 52.83 | 53.1 |
| TraesCS6A01G312900.1 | Wheat | nucleus | 50.26 | 52.98 |
| TraesCS5B01G120400.1 | Wheat | nucleus | 52.49 | 52.76 |
| TraesCS5D01G127000.1 | Wheat | nucleus | 52.49 | 52.76 |
| TraesCS6B01G342900.1 | Wheat | nucleus | 49.06 | 52.38 |
| Os03t0802700-01 | Rice | nucleus | 52.49 | 51.86 |
| TraesCS5A01G042300.1 | Wheat | nucleus | 50.6 | 51.22 |
| EER90714 | Sorghum | nucleus | 54.03 | 50.56 |
| TraesCS6A01G356000.1 | Wheat | nucleus | 49.4 | 50.26 |
| Os06t0535100-00 | Rice | nucleus | 49.57 | 49.66 |
| TraesCS5D01G050600.1 | Wheat | nucleus | 47.34 | 49.37 |
| Zm00001d000431_P001 | Maize | plastid | 40.99 | 49.18 |
| KXG37786 | Sorghum | nucleus | 37.56 | 48.34 |
| OQU76528 | Sorghum | nucleus | 49.57 | 48.25 |
| HORVU5Hr1G010160.3 | Barley | cytosol | 49.23 | 47.67 |
| Zm00001d023501_P001 | Maize | nucleus | 49.23 | 47.6 |
| Zm00001d013056_P001 | Maize | nucleus | 52.32 | 46.49 |
| TraesCS7B01G213800.1 | Wheat | nucleus | 24.01 | 45.31 |
| TraesCS7A01G313300.1 | Wheat | nucleus | 23.5 | 44.34 |
| TraesCS7D01G309800.1 | Wheat | nucleus | 23.67 | 44.23 |
| CDY42845 | Canola | cytosol | 25.39 | 32.96 |
| CDY47007 | Canola | cytosol | 25.21 | 32.74 |
| CDY17287 | Canola | nucleus | 32.93 | 29.36 |
| CDY52844 | Canola | cytosol | 24.01 | 28.75 |
| CDX81759 | Canola | cytosol | 24.01 | 28.69 |
| CDY40740 | Canola | cytosol | 25.56 | 27.54 |
| CDX79974 | Canola | nucleus | 31.9 | 27.03 |
| CDX96202 | Canola | cytosol | 12.86 | 26.98 |
| CDY23886 | Canola | plasma membrane | 31.73 | 26.39 |
| CDY14112 | Canola | cytosol | 26.42 | 25.93 |
| CDY04952 | Canola | nucleus | 26.42 | 25.93 |
| CDY44780 | Canola | mitochondrion | 25.39 | 25.61 |
| CDX70149 | Canola | nucleus | 25.9 | 25.25 |
| CDX84428 | Canola | mitochondrion | 26.42 | 21.78 |
| CDY41525 | Canola | mitochondrion | 26.42 | 21.66 |
| CDY45370 | Canola | mitochondrion | 26.76 | 19.95 |
| CDY49890 | Canola | mitochondrion | 26.24 | 19.62 |
| CDY40519 | Canola | nucleus | 23.5 | 18.07 |
| CDX69933 | Canola | cytosol | 4.12 | 17.65 |
| CDY52719 | Canola | nucleus, plastid | 23.16 | 16.28 |
| CDX79187 | Canola | cytosol | 23.5 | 16.16 |
| CDY34979 | Canola | nucleus, plastid | 22.98 | 16.11 |
| CDY50846 | Canola | nucleus | 23.16 | 16.09 |
| CDX68066 | Canola | cytosol | 23.5 | 16.08 |
| CDY53643 | Canola | nucleus | 22.98 | 15.88 |
| CDY32273 | Canola | nucleus | 21.61 | 13.8 |
| CDY21554 | Canola | mitochondrion | 26.07 | 11.18 |
| CDX69935 | Canola | mitochondrion | 26.24 | 11.1 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078HGJ9 | UniProt:A0A078HGJ9 | EnsemblPlants:CDY36514 | ProteinID:CDY36514 |
| ProteinID:CDY36514.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF4217 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00062187001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF13959 | ScanProsite:PS00039 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF305 | InterPro:RNA-helicase_DEAD-box_CS |
| InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SMART:SM01178 | SUPFAM:SSF52540 | UniParc:UPI0004EE6BC6 |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g48730DRNA helicase [Source:UniProtKB/TrEMBL;Acc:A0A078HGJ9]
Coordinates
chrLK032377:-:340176..343000
Molecular Weight (calculated)
65912.9 Da
IEP (calculated)
9.905
GRAVY (calculated)
-0.529
Length
583 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNLDLEQHS PEKEEMKTKK KRSRDKAKIL KQLAKREVKE PKSITDEEPK KKKKKLKQVA TEDEETEAIS DEEPKKKKKK KKAKQVEEEG EESGGNGIMT
101: NETFESLGLS DNTHKSIKEM GFARMTQIQA KAIPPLMMGK DVLGAARTGS GKTLAFLIPA VELLYHVRFT PRNGTGVIVI CPTRELAIQS YLVAKELLKF
201: HSQTVGKVIG GEPRKKEVEI LVKGVNLLVA TPGRLLDHLE NTDGFVFKNL KFLVMDEADR ILEQNFEEDM KKIIKLLPKT RQTSLFSATQ TSKVEDLARV
301: SLTSPVYIDV DEGRKEVTNE GLEQGYCVVP SAKRLLFLLT FLKTFHGKKK IMVFFSTCKS TKFHTELFRY IKIDCLAIHG GMEQSKRTST FFQFVKLETG
401: VLLCTNVGAR GLDFPRVDWI VQYDPPDDPT EYIHRVGRTA RGEGAKGKAL LVLTPAELQF IQYLKAAKIP VEEHEFEEEK LLNVQAFLEK TISENSALSV
501: SAKEAYKTYI SGYDSHSMKD VFNAHRLDLK EVAASFCFSS PPKLLLKIHR EGDGYRSKRE PVNNKFNRGR GGRPGGKTKF ERY
101: NETFESLGLS DNTHKSIKEM GFARMTQIQA KAIPPLMMGK DVLGAARTGS GKTLAFLIPA VELLYHVRFT PRNGTGVIVI CPTRELAIQS YLVAKELLKF
201: HSQTVGKVIG GEPRKKEVEI LVKGVNLLVA TPGRLLDHLE NTDGFVFKNL KFLVMDEADR ILEQNFEEDM KKIIKLLPKT RQTSLFSATQ TSKVEDLARV
301: SLTSPVYIDV DEGRKEVTNE GLEQGYCVVP SAKRLLFLLT FLKTFHGKKK IMVFFSTCKS TKFHTELFRY IKIDCLAIHG GMEQSKRTST FFQFVKLETG
401: VLLCTNVGAR GLDFPRVDWI VQYDPPDDPT EYIHRVGRTA RGEGAKGKAL LVLTPAELQF IQYLKAAKIP VEEHEFEEEK LLNVQAFLEK TISENSALSV
501: SAKEAYKTYI SGYDSHSMKD VFNAHRLDLK EVAASFCFSS PPKLLLKIHR EGDGYRSKRE PVNNKFNRGR GGRPGGKTKF ERY
001: MANLDMEQHS SENEEIKKKK HKKRARDEAK KLKQPAMEEE PDHEDGDAKE NNALIDEEPK KKKKKKNKKR GDTDDGEDEA VAEEEPKKKK KKNKKLQQRG
101: DTNDEEDEVI AEEEEPKKKK KKQRKDTEAK SEEEEVEDKE EEKKLEETSI MTNKTFESLS LSDNTYKSIK EMGFARMTQI QAKAIPPLMM GEDVLGAART
201: GSGKTLAFLI PAVELLYRVK FTPRNGTGVL VICPTRELAI QSYGVAKELL KYHSQTVGKV IGGEKRKTEA EILAKGVNLL VATPGRLLDH LENTNGFIFK
301: NLKFLVMDEA DRILEQNFEE DLKKILNLLP KTRQTSLFSA TQSAKVEDLA RVSLTSPVYI DVDEGRKEVT NEGLEQGYCV VPSAMRLLFL LTFLKRFQGK
401: KKIMVFFSTC KSTKFHAELF RYIKFDCLEI RGGIDQNKRT PTFLQFIKAE TGILLCTNVA ARGLDFPHVD WIVQYDPPDN PTDYIHRVGR TARGEGAKGK
501: ALLVLTPQEL KFIQYLKAAK IPVEEHEFEE KKLLDVKPFV ENLISENYAL KESAKEAYKT YISGYDSHSM KDVFNVHQLN LTEVATSFGF SDPPKVALKI
601: DRGGYRSKRE PVNKFKRGRG GGRPGGKSKF ERY
101: DTNDEEDEVI AEEEEPKKKK KKQRKDTEAK SEEEEVEDKE EEKKLEETSI MTNKTFESLS LSDNTYKSIK EMGFARMTQI QAKAIPPLMM GEDVLGAART
201: GSGKTLAFLI PAVELLYRVK FTPRNGTGVL VICPTRELAI QSYGVAKELL KYHSQTVGKV IGGEKRKTEA EILAKGVNLL VATPGRLLDH LENTNGFIFK
301: NLKFLVMDEA DRILEQNFEE DLKKILNLLP KTRQTSLFSA TQSAKVEDLA RVSLTSPVYI DVDEGRKEVT NEGLEQGYCV VPSAMRLLFL LTFLKRFQGK
401: KKIMVFFSTC KSTKFHAELF RYIKFDCLEI RGGIDQNKRT PTFLQFIKAE TGILLCTNVA ARGLDFPHVD WIVQYDPPDN PTDYIHRVGR TARGEGAKGK
501: ALLVLTPQEL KFIQYLKAAK IPVEEHEFEE KKLLDVKPFV ENLISENYAL KESAKEAYKT YISGYDSHSM KDVFNVHQLN LTEVATSFGF SDPPKVALKI
601: DRGGYRSKRE PVNKFKRGRG GGRPGGKSKF ERY
Arabidopsis Description
RH27DEAD-box ATP-dependent RNA helicase 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB89]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.