CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42845	Canola	cytosol	99.33	99.33
Bra029342.1-P	Field mustard	cytosol	99.33	98.67
AT5G60990.1	Thale cress	nucleus	95.1	93.64
Solyc10g007550.2.1	Tomato	cytosol, nucleus	77.73	79.5
KRH65120	Soybean	cytosol	75.72	77.45
VIT_01s0010g01890.t01	Wine grape	nucleus	70.82	77.37
KRH48210	Soybean	nucleus	53.67	75.31
VIT_11s0065g01090.t01	Wine grape	cytosol	75.72	63.08
OQU93356	Sorghum	cytosol	63.25	62.56
TraesCS6A01G114900.1	Wheat	nucleus	62.58	61.49
TraesCS2A01G128700.1	Wheat	nucleus	62.36	61.14
TraesCS2D01G131200.1	Wheat	nucleus	62.14	60.92
Zm00001d014787_P001	Maize	nucleus	62.58	60.43
TraesCS6D01G103400.1	Wheat	nucleus	59.47	60.14
KXG22990	Sorghum	cytosol	59.47	60.0
Os03t0669000-01	Rice	cytosol, nucleus, plastid	61.69	58.69
TraesCS6B01G142500.1	Wheat	mitochondrion, nucleus	62.14	58.12
Zm00001d048477_P001	Maize	plastid	24.05	57.75
Os07t0660000-00	Rice	cytosol	57.24	57.75
TraesCS2B01G150800.1	Wheat	mitochondrion	61.92	53.88
HORVU2Hr1G022490.2	Barley	nucleus	58.35	53.14
HORVU6Hr1G020570.1	Barley	plastid	61.92	49.12
GSMUA_Achr8P34380_001	Banana	cytosol	71.49	44.15
CDY52844	Canola	cytosol	42.32	39.01
CDX81759	Canola	cytosol	42.09	38.73
CDY18530	Canola	nucleus	33.18	26.23
CDX99342	Canola	nucleus	32.96	26.06
CDX92251	Canola	nucleus	32.96	26.01
CDX82336	Canola	nucleus	33.18	26.0
CDX95512	Canola	nucleus	32.96	25.96
CDX75974	Canola	nucleus	33.18	25.6
CDY36514	Canola	nucleus	32.74	25.21
CDY08740	Canola	nucleus	32.74	24.75
CDX96202	Canola	cytosol	14.7	23.74
CDY40740	Canola	cytosol	28.51	23.66
CDY04952	Canola	nucleus	30.29	22.9
CDY14112	Canola	cytosol	30.29	22.9
CDX70149	Canola	nucleus	29.84	22.41
CDY44780	Canola	mitochondrion	28.73	22.32
CDX79974	Canola	nucleus	30.73	20.06
CDY17287	Canola	nucleus	29.18	20.03
CDY23886	Canola	plasma membrane	30.73	19.69
CDX84428	Canola	mitochondrion	29.18	18.53
CDY41525	Canola	mitochondrion	29.18	18.42
CDY40519	Canola	nucleus	30.96	18.34
CDY50846	Canola	nucleus	31.85	17.04
CDY53643	Canola	nucleus	31.85	16.94
CDY52719	Canola	nucleus, plastid	30.73	16.65
CDY34979	Canola	nucleus, plastid	30.51	16.47
CDX79187	Canola	cytosol	29.4	15.57
CDX68066	Canola	cytosol	29.4	15.49
CDY49890	Canola	mitochondrion	26.28	15.13
CDY45370	Canola	mitochondrion	26.06	14.96
CDY32273	Canola	nucleus	28.51	14.02
CDX69933	Canola	cytosol	3.79	12.5
CDY21554	Canola	mitochondrion	27.39	9.05
CDX69935	Canola	mitochondrion	27.39	8.92

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078IA41	UniProt:A0A078IA41	EnsemblPlants:CDY47007	ProteinID:CDY47007
ProteinID:CDY47007.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00086516001	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF78	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0004EE08E8	SEG:seg	:	:	:	:

Description

BnaC02g41920DBnaC02g41920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IA41]

Coordinates

chrLK032694:-:53552..56204

Molecular Weight (calculated)

50446.2 Da

IEP (calculated)

9.419

GRAVY (calculated)

-0.382

Length

449 amino acids

Sequence
(BLAST)

001: MEEESEVVKT FAELGVREEL VKACERLGWK NPSKIQVEAL PYALEGRKDV IGLAQTGSGK TGAFALPILQ ALLEYVNNAE PKKGRRPDPA FFACVLSPTR
101: ELAIQIAEQF EALGSDISLR CAVLVGGIDR MQQTIALGKR PHVIVATPGR LWDHMSDTKG FSLKTLKYLV LDEADRLLNE DFEKSLNQIL EEIPRDRKTY
201: LFSATMTKKV RKLQRACLRN PVKIEAASKY STVDTLKQQY RFVAAKYKDC YLVYILTEMP DSTSMIFTRT CDGTRFMALM LRSLGFRAIP ISGQMTQSKR
301: LGALNKFKAG ECNILVCTDV ASRGLDIPSV DMVINYDIPT NSKDYIHRVG RTARAGRSGV GISLVNQYEL EWYLQIEKLI GKKLPEYPAE EDEVLSLLER
401: VSEAKKLSAM NMKESGGRNK RRGEDDEESE RFLGGGNKGD KKSSKKFKR

Best Arabidopsis Sequence Match ( AT5G60990.1 )
(BLAST)

001: MEEENEVVKT FAELGVREEL VKACERLGWK NPSKIQAEAL PFALEGKDVI GLAQTGSGKT GAFAIPILQA LLEYVYDSEP KKGRRPDPAF FACVLSPTRE
101: LAIQIAEQFE ALGADISLRC AVLVGGIDRM QQTIALGKRP HVIVATPGRL WDHMSDTKGF SLKSLKYLVL DEADRLLNED FEKSLNQILE EIPLERKTFL
201: FSATMTKKVR KLQRACLRNP VKIEAASKYS TVDTLKQQYR FVAAKYKDCY LVYILSEMPE STSMIFTRTC DGTRFLALVL RSLGFRAIPI SGQMTQSKRL
301: GALNKFKAGE CNILVCTDVA SRGLDIPSVD VVINYDIPTN SKDYIHRVGR TARAGRSGVG ISLVNQYELE WYIQIEKLIG KKLPEYPAEE DEVLSLLERV
401: AEAKKLSAMN MKESGGRKRR GEDDEESERF LGGNKDRGNK ERGGNKDKKS SKKFKR

Arabidopsis Description

RH10DEAD-box ATP-dependent RNA helicase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.